Coccomyxa subellipsoidea: COCSUDRAFT_47676
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Entry
COCSUDRAFT_47676 CDS
T02914
Name
(RefSeq) hypothetical protein
KO
K12821
pre-mRNA-processing factor 40
Organism
csl
Coccomyxa subellipsoidea
Pathway
csl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
COCSUDRAFT_47676
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csl03041
]
COCSUDRAFT_47676
Spliceosome [BR:
csl03041
]
Complex A
U1 snRNP components
U1 related factors
COCSUDRAFT_47676
Complex B
COCSUDRAFT_47676
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
Motif
Other DBs
NCBI-GeneID:
17040729
NCBI-ProteinID:
XP_005647286
JGI:
47676
UniProt:
I0YWH3
LinkDB
All DBs
AA seq
716 aa
AA seq
DB search
MAGLGPGPMHRPPSLPGLPGPPGSGQAMPQQLRPPMPLGGSAGATPNVWTEHTAPDGRKY
YHNKALNKSSWEKPAELLSPKEQKETSGSEWKEFTAPDGRKYYYNKVTKESKWTVPDELK
QAREAAAAKASPNPAAGSVQVVKLDAGSSPASVPNGASQASPLPTPSATVKDDADAKPAA
SAAAAADVKFMYSSKEEAKDAFKELLASAQVASDWSWEQTMRSIISDPRYSALKSLGEKK
ACFNEYQQARKNEEVFEKRQRLKRGREEFTAMLESTTDLRASTRYSAAAALLEDDPRWKA
VQREERELLYADFIKEKDKKEREAKKAERRRRTAAFRVLLEKTTGIKVDTPWRKAMVKLE
GENEYEALDKLDRLEVFQDYILHLERKEKEAKEKEKEERRRRERKNRDAFKDLLQRHLSE
GVLVAHMRWKDYQPLVKKEESWIAVEKNLTGSSAKELFEDALEVADAQFDKDKALLKEVT
KEIPVQPDSTFDHFNAALEAVDSVKNVIKPNRKLVFDELLAKVKERAAKEEKRRKRARDD
FIDLLRDSRAMTVDSSWEDIRPSLESAPEYKAISKEEREQAFNEYRAYLKEKAERRKAAE
DGEEGNADKHKKKRHKEKKDKRDRDGGDEDDKRHKRSKRDEDAEGGSEEKKSKRHKRDKE
KRHRSSRKSEGEAAADAGDGATPDKEDGEPAAAATPAADGVAAAPATEEPTEDGEL
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atggcggggctggggcctgggcccatgcacaggccgcctagcctgcccggcctgcccggc
ccgcccgggagcgggcaggcaatgccgcagcagctgcggccgcccatgccgctcgggggc
agcgccggggcgaccccgaacgtctggacggagcacaccgcgcctgacgggcgcaagtac
taccacaacaaggcgctcaacaagtccagctgggagaagcccgctgagctcctgtcaccc
aaggagcagaaggaaacctcaggatctgagtggaaggaattcacggccccagacggccgc
aaatactactacaacaaggtgactaaggagtcaaagtggaccgtgccggacgagctgaag
caggcaagggaagccgctgccgccaaagccagccccaaccctgctgcaggctcagtgcag
gtggtgaagctggatgctggaagcagtccggcctcggtgcccaacggcgcgtcgcaggcg
tccccgctgccgacgccctcggccactgtcaaggatgatgcggacgccaaacccgcagcc
agtgccgcagcagccgctgatgttaaattcatgtactcctccaaggaggaggccaaggat
gcattcaaggagctgctggcgtcggcacaggtggcgtctgactggtcctgggagcagacc
atgcgcagcattatcagcgaccccaggtactcagcgctgaagtcgctgggtgagaagaag
gcgtgcttcaacgagtaccagcaggcgcgcaagaacgaggaggtgtttgagaagcggcag
cggctgaagcgcgggcgagaggaattcaccgccatgctggaatcgacgacggatctgcgc
gccagcacccgctactccgcggccgctgccctgctcgaggatgatcctcgctggaaggcc
gtgcaaagggaggagcgggagcttctgtacgccgacttcataaaggagaaggacaagaag
gagagggaagccaagaaggccgagcgcaggcgcaggacggccgccttcagggtgcttctg
gaaaagaccaccggcatcaaggtggacacgccctggcgcaaggcaatggtgaagttggag
ggggagaacgagtacgaggccctggacaagctggaccgcctggaggtcttccaggactac
atcctgcacctggagaggaaggagaaggaggccaaggagaaggagaaggaggagcggcgg
cggagggaacgcaagaatcgcgacgccttcaaagacctgctccagcggcacctcagcgag
ggtgtcctcgttgcccacatgcgctggaaggattaccagccgctggtgaagaaggaggaa
tcgtggatagccgtggagaagaacctgacggggtcctcggccaaggagttgtttgaggac
gcgctggaggtggcagatgcgcagtttgacaaggacaaggccttgttgaaggaggtcacc
aaggagattcccgtgcagcctgactccacctttgaccacttcaacgccgccctcgaagcc
gttgacagcgtcaaaaacgtcatcaagcccaacaggaagctggtgtttgatgagctgctg
gccaaggtgaaggagcgcgcggccaaggaggagaagcgccgcaaacgcgcacgcgatgat
ttcatcgatctgctgcgtgattcgcgcgccatgacggtcgactcctcttgggaagatatc
cggccctccctggaaagcgcccccgagtacaaagcgatttccaaggaagaaagggagcag
gccttcaatgagtacagagcatacctgaaggagaaggcggagagaaggaaggcagcagag
gatggcgaggaggggaacgctgataagcacaagaagaagcgccataaggagaagaaggac
aagcgcgaccgtgacgggggagatgaagatgacaaacggcacaagcggtcaaagagggac
gaggatgcagaggggggctccgaggagaagaagagcaagcggcacaagcgagacaaggag
aagcgccaccgcagcagccgcaagagcgaaggagaagcggcggccgacgccggggacggc
gccacgcccgacaaggaggacggcgagccggccgcagccgccaccccggcggccgacggc
gttgcggccgcgccggcaacggaggagccaaccgaggacggcgagttgtga
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