Coccomyxa subellipsoidea: COCSUDRAFT_52734
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Entry
COCSUDRAFT_52734 CDS
T02914
Name
(RefSeq) tRNA pseudouridine synthase D
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
csl
Coccomyxa subellipsoidea
Brite
KEGG Orthology (KO) [BR:
csl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
csl03016
]
COCSUDRAFT_52734
Enzymes [BR:
csl01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
COCSUDRAFT_52734
Transfer RNA biogenesis [BR:
csl03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
COCSUDRAFT_52734
Prokaryotic type
COCSUDRAFT_52734
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TruD
TPR_7
Motif
Other DBs
NCBI-GeneID:
17043642
NCBI-ProteinID:
XP_005649534
JGI:
52734
UniProt:
I0Z2X1
LinkDB
All DBs
AA seq
691 aa
AA seq
DB search
MSSSIEEDVGISCYITSTPPLSAILKQRYSDFLVNEIDCNGNVVQLNSTAVSTSERAPSP
AAPAPACSETGNIEPNTAPEAAVVPPEAPPHASADIAALLGYAQLLSGLDKLLPSEGVAA
VQQFLTAVEAYERSWAEADAPSDADAPVEKPSSAERVKPPLPITFAVSSNKDERTAVHHF
FKQPGLPKCSTETMPAGEDGENCMRLCYHAQRRKRKREAANGVGGAKAAKSGGNNEQVFL
PGGPKYCRFALCKENMDSGHALSLLARAVHCSPSCFGVAGTKDKRAVTVQQVTAFKVAPS
RLASSNGRLRGMRVGDFELVDEPLHLGDAKGNRFEVTLRDVGAGSLHDVVAAVEAVREDG
FINYFGLQRFGSTGGRTHRIGALLLKGEWKAAVDMILGRIEGERSDNDEARRLYLEEGDV
SGALKLMQRHLTAERALLEGLRKQKGANFCQALQQIPRNTRTMYVHAYQSRLWNEAASHR
VRTFGAKEAVAGDLVLPRDAAEAAPEEEAEAADEQLAQQPERGRLPAEAHVVTEEEAASA
RYSIDDVVLPLPGCRVQYPRHATAQVYRDLAAKDGIPLDSAPHGVRDFSMTALPGGYRRL
LHRPRDLNWRLLRYSDPDAPLALSTLDRLTGVAPPAVNAIESGEEVGAGEKIALQLAFSL
PSSTYATMLVRELTKTSTATAFHKSLSQLAK
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgagcagctcaatcgaagaagacgttggcatatcatgctacataacatcgacaccgccc
ctgagtgcaatccttaagcaaaggtacagtgacttcctcgtgaacgaaatcgactgcaat
ggtaatgtcgtccagctcaactcgacagcagtcagcacctcggagagggcgccaagccct
gccgctccagcaccagcctgcagtgagacagggaacattgagcccaacacagctcctgaa
gcagctgttgtacccccagaggcacctccacacgcttcagcagacatcgctgcacttctt
ggatatgcacagctcctgtcagggctggacaagctgctgccgtccgaaggcgtcgcagca
gtgcagcagtttctcacagcagtagaggcctatgagcggtcatgggcggaggctgatgct
ccaagcgatgctgatgctcctgtagagaagcccagcagcgcagagagagtgaagccgccg
ctgcccatcacttttgcagtcagcagcaacaaggacgagcgcacagcagtacaccacttt
ttcaagcagcctgggctgccaaaatgctccacagagaccatgcctgccggcgaggatgga
gagaactgcatgcggctctgctatcatgcacagagaaggaagcggaaacgggaggcggcc
aacggcgtcggcggcgccaaggctgcaaaatcaggagggaacaacgaacaagtgtttctg
cctggaggccccaagtactgccgtttcgcattgtgcaaggagaacatggacagcggccat
gcactgtcgttgctggctcgcgcagtgcactgctcaccctcctgcttcggcgtagccggt
accaaggacaagcgtgcagtcaccgtgcagcaagttaccgctttcaaggtggcgccgtcg
aggctggcgagttcaaatgggcggctacggggaatgcgcgtcggagacttcgaactcgtg
gatgaacccctgcacctcggggatgcgaagggcaaccgcttcgaggtgactttgagggac
gtgggcgcgggcagccttcacgatgtggttgcggcggtggaagcggtgcgggaagacggg
ttcatcaattacttcggcctccaacgctttggcagcaccggcggccgcacgcacaggatt
ggagccctgctgctgaagggcgagtggaaggctgcggtggacatgatactggggcggata
gagggtgagcgctcagataatgacgaagcgcggcggctgtacctggaagagggtgatgtc
agcggcgcactcaagctgatgcagcgccacctcaccgctgagcgcgcgctgctcgagggg
ctgaggaagcagaagggcgccaacttctgccaggcgctgcagcagatcccccgcaacacg
cgcaccatgtacgtgcatgcctaccaaagcagactttggaacgaagccgccagccaccga
gtgcgcacgttcggcgccaaagaggccgttgcaggggatttggttctgccgcgggacgct
gccgaggctgccccagaggaggaagccgaggctgctgacgagcagctggcgcagcagccg
gagcgggggcggctgccggcagaggcgcatgttgtgaccgaggaggaagctgcctctgcg
cgctacagcattgacgatgttgtgctacccctccctgggtgcagggtgcagtacccacgc
catgccaccgctcaggtctatagggaccttgcagcaaaggacggcattccgctcgacagc
gcgccacacggggtgcgggatttttcgatgacggcgcttcccggcggctaccggcggctg
ctgcaccggccgcgcgacctaaactggcgcctccttcggtacagcgatcccgacgcgccc
ctcgctttatcaactctagaccgtctcaccggcgtcgctcccccggccgtcaatgcaata
gaatcaggtgaggaggttggcgcaggggagaagattgcactgcagctggcattcagtctt
cccagctccacatatgcaaccatgcttgtgcgtgaactgaccaagacttccacagcgact
gcatttcacaagtcgctctcgcagcttgcaaagtga
DBGET
integrated database retrieval system
