Ceratosolen solmsi marchali (fig wasp): 105361312
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Entry
105361312 CDS
T06056
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
csol
Ceratosolen solmsi marchali (fig wasp)
Pathway
csol03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csol00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105361312
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csol03041
]
105361312
Enzymes [BR:
csol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105361312
Spliceosome [BR:
csol03041
]
Complex C
Other components
Step II factors
105361312
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_N
HA2_C
DEAD
AAA_22
AAA_19
nSTAND3
ResIII
Flavi_DEAD
T2SSE
AAA_30
AAA_16
ATPase
Sigma54_activat
PhoH
AAA_7
SRP54
ABC_tran
cobW
Sigma54_activ_2
AAA_23
Motif
Other DBs
NCBI-GeneID:
105361312
NCBI-ProteinID:
XP_011496740
LinkDB
All DBs
Position
Unknown
AA seq
1137 aa
AA seq
DB search
MEENPDLYRLQGSDSTETGGLIIAKKKPSDHVFKKPQTSIFGLDKLAEQKRRENSVDNHY
AKDRRYRTHEEETPTYTGGVNKSAQDKLDARLKHQRFDKNVKNRDRDKDRRKDRDKDRNR
NRERDRYGGSYRDRNRYGDSARDRSSHRDWTLRFKDEPQTPKYRVKDSTSRTNWDDDDDD
DEPRRRSSWDHPTPNLYSSRDIRESIRSEFTPSYKYNIWAKDRKTTGATPIVDNEERELW
EQEQRRLDREWYGLGDDEGRHFDNVSEEYTQKKEMELEARKQKRVSAQQRQINKDNELWE
RNRMLTSGVVSSLDHDDDFDDEGETRVHLLVHNVVPPFLDGRIVFTKQPEPVIPVRDPTS
PMALVARKGSVLVRAYREQKERRRAQKKHWELAGTNLGNIMGINDTRKEDKEAPGQETDY
KAGQKYANYINDEIVVEGRYKRIQEQRRRLPVFAVRQELLNVIRENSVVIIVGETGSGKT
TQLTQYLHEDGYSKNGMVGCTQPRRVAAMSVAKRVSDEMDSNLGEKVGYAIRFEDCTSKE
TIIKYMTDGILLRESLREGDLDHYSVIIMDEAHERSLSTDVLFGLLRDVVARRHDLKLIV
TSATMDSTKFSSFFGNAATFQIPGRTFPVETIFNKNHVEDYVEAAVKQVMNIHLQHHIGD
ILVFMPGQEDIEVTCEVLKERLGEIEGAAPLSILPIYSQLPSDLQAKIFQQAKEGLRKCV
VATNIAETSLTVDGIVFVVDSGYCKLKVYNPRIGMDALQIYPVSQANSNQRSGRAGRTGP
GQCFRLYTERQYLDELLTTGVPEIQRTNLANTVLLLKSLGVQDLLAFHFMDPPPQDNILN
SLYQLWILGALDNTGRLTPLGRQMAEFPLDPPQCQMLIIASKLGCTSEILIIVSMLSVPS
IFYRPKGREEDSDSAREKFQVPESDHLTFLNVYNQWKTNGYSSSWCNDHFIHAKAMRKVR
EVRQQLEEILKQQKMEATSCGTEWDIVRKCICSAYFHQAARLKGIGEYVNCRTGMPCHLH
PTSALFGMGFTPDYVVYHELVMTAKEYMQCVTAVDGYWLAELGPMFFSXGRAKKQALQHL
NEMEHQMKEAEIEMKARAQEQLEREQASVRKQEILTPGMKEPGTPVSYRKTPARLGL
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atggaagagaatcctgatttatatagactccaaggtagcgatagcactgaaacgggtggt
ttgattatcgctaaaaagaaaccctcggatcatgtttttaagaaacctcagacatctatt
tttggacttgacaagcttgcggaacaaaagcgaagagaaaattcagtagataatcattat
gccaaggatagaaggtatagaacccacgaagaagaaactccaacgtacaccggtggagtc
aataaaagcgcacaagataaattggatgcgagattgaaacatcaaaggttcgacaaaaat
gttaaaaatcgagatcgagataaagacagaaggaaagatagggataaagataggaataga
aacagagagagagatagatatggaggtagctacagagatagaaataggtatggggacagt
gctagggataggagtagccacagagattggacgttacgattcaaagatgagcctcagaca
ccaaaatatagagtgaaggattcgacatccagaactaattgggacgacgacgacgacgac
gatgaacctagaagaagatcgagttgggatcatccaactccaaatttatatagcagtaga
gatataagggaaagtattagaagtgaatttacaccgtcgtataaatacaatatttgggcg
aaagatcgtaaaacaaccggtgctactccaatagtggataacgaagaaagagaattatgg
gaacaagaacagaggaggcttgatcgtgagtggtacggactaggcgatgacgaaggtagg
catttcgataatgtttccgaagaatatactcaaaagaaagagatggaattagaagcgaga
aaacagaagcgagtatccgcgcaacaacggcaaataaacaaagataacgagttatgggaa
cgtaacagaatgttaacttctggagtcgttagctcattagatcacgatgacgattttgac
gatgaaggtgaaacaagagttcacttactagtgcacaatgttgttccaccatttttggat
ggccgaattgttttcacaaagcaacccgaacctgtgatacctgtgagagatccaacctct
cccatggctttagtagcgaggaaaggttctgttctagtacgtgcttatagagaacaaaag
gagcgcagacgcgcgcaaaagaagcactgggaattagctggaactaatcttggaaatatt
atgggaataaatgatactcgaaaagaagataaagaagcaccgggacaggagacagattat
aaagctggccaaaaatatgccaattacattaatgatgagatagtagtagaaggtagatac
aaaaggattcaagaacaaagaagaagacttcctgtatttgccgttagacaagaactactt
aatgttattagagaaaatagcgttgtaattatcgttggtgaaactggtagtggtaagact
actcagttaacacaatatttacacgaagatggatatagtaaaaatggtatggttggttgt
actcaaccaagaagagtggcagctatgtctgttgctaaaagagtgtcagatgaaatggat
tctaatttaggagagaaagttggttatgctattcgatttgaagattgtacatctaaagag
acaatcatcaaatatatgactgatggtatcctgttgagagaaagcttacgcgaaggagat
ttagatcactacagtgtcattattatggatgaagctcatgaacgttctttatccactgat
gttttatttggattattgagagatgttgtcgcaagacgtcatgatcttaagctgatcgtt
acttccgccactatggattcaaccaagttttcgtcgttttttggcaacgcagctaccttt
cagataccaggtcgtacatttcccgttgaaacaatctttaataagaatcacgttgaagat
tatgtggaggccgctgttaaacaagttatgaatattcatttacaacatcatatcggcgat
attttggttttcatgccaggtcaagaagatatcgaggtgacttgtgaagtcttaaaagaa
cgtttgggcgagatcgagggggctgcacctctttctattttgcccatttactcgcaattg
ccatccgacttgcaagcgaagatttttcaacaggcaaaagaaggactccgtaaatgtgtc
gtggcgacaaatatagctgagacatccttgaccgttgatggtattgtctttgtggttgac
tccggatactgtaagctcaaagtctacaatccacgtataggtatggacgcgttgcagata
tatcctgtatcgcaagctaattctaatcagaggtctggtcgagctggaagaactggtccc
ggtcaatgttttcgactatacaccgaaagacaatatcttgacgaattgctaacgaccggt
gtacccgagattcaaagaacgaatttagcgaatacggtgttgctgctcaaatcgctgggt
gtacaagatttgcttgcttttcactttatggatccaccgcctcaggacaatatcctgaat
tcgctatatcaactgtggatactaggcgccttggataataccggcagacttacgcctttg
ggacgacaaatggctgagttcccattggatccacctcagtgtcagatgcttatcattgct
tcgaaactcggctgcacatccgagatcctcatcatcgtgtcaatgctctcagtgccgtca
atattttacaggcctaaaggacgcgaggaagattccgattccgctagagagaaatttcag
gtgccggaatccgatcatttaacgtttttaaatgtttataaccagtggaagacaaatggc
tactccagctcttggtgcaacgaccattttatccatgcaaaggctatgagaaaggtcaga
gaagtaaggcagcagttggaagaaattttgaagcaacaaaaaatggaggcaacgagttgc
ggcacggaatgggacattgtgaggaaatgtatttgctcagcttatttccatcaggccgcg
aggcttaaaggtattggcgagtacgtcaattgtcgtacgggtatgccatgccatcttcat
cctacttccgctttatttggaatgggattcacaccggattatgtggtttatcacgagctt
gtaatgacagccaaagaatatatgcaatgtgtgacggctgttgatggatattggctggcc
gaattgggcccaatgttctttagtngtggtcgggcgaagaaacaagctcttcagcatttg
aacgaaatggagcaccaaatgaaagaggccgagatcgagatgaaagcaagagctcaggag
cagctcgagcgagagcaagcctccgttagaaaacaagaaatattaactcctggaatgaaa
gaacccggaactcctgtctcatatcgtaaaactccagcacgtttagggttgtaa
DBGET
integrated database retrieval system
