Corynebacterium simulans: WM42_0471
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Entry
WM42_0471 CDS
T04316
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
csp
Corynebacterium simulans
Pathway
csp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
csp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
WM42_0471 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csp03400
]
WM42_0471 (mfd)
Enzymes [BR:
csp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
WM42_0471 (mfd)
DNA repair and recombination proteins [BR:
csp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
WM42_0471 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
RecG_dom3_C
UB2H
DUF3638
Motif
Other DBs
NCBI-ProteinID:
AMO88222
UniProt:
A0A127NRP4
LinkDB
All DBs
Position
complement(477877..481533)
Genome browser
AA seq
1218 aa
AA seq
DB search
MATPMLAGLLKVAASDPKLKGLATQVGEPHLHITGIDQARPWAIGTLANQAPVLVVTATG
REAEDLTAELTAMMGDKVAQFPAWETLPHERLSPGADIVGRRAQVLHRIAEGKLRVVVTA
ARGYSQPILKNVEGRSPISLAEDMEIELEAIVSQLEFRAYKHVDMVAKRGEYAVRGGILD
VFPTTLDYPVRVEFWGDEITDIRQFSVADQRAIPEIEVGAVDIFPARELPITDDVAKRAQ
DLALQHPGNAALVELLTKVGEHIPADGMEALLAVLSDAPLVTLPEFMPEGTHVLLVAPEK
IRTRIADLESTDAEFLAAGWEAAAMGADGPLTAEGLDTEAASYRSYESLEATCANASLPL
WTFAPPGMFMADEAQTLPLEYEPGPTPRGDIKEIDAMMAQLLAHTRDGGRAAFIAPAQGA
IKRMVERFAEKGIRTKVATPGWEPTPGEVTLYQALSHAGLVFPKARSAGGSQKEQLPLVV
ITETDLTGNRVGDIAGAKRRPAKRRNRVDPLALKQGDHVVHETHGIGRFLKMAERTIQSG
DETSRREYIVLEYASSKRGQPADQLWVPMDSLDLLSKYTGGEKPTLSKMGGSDWKNTKKK
ARAAVREIAGELVELYAKRQAAPGHQFAPDNPWQAEMEDNFPYVETEDQMMAIDSVKQDM
ESSVPMDRVVVGDVGYGKTEVAVRAAFKAVQDGMQVAVLVPTTLLAQQHADTFRERMTGF
PVNIQVLSRFTSTKDAKEIVSGLADGSVDIVIGTHRLLQTGVHWKNLGLIVVDEEQRFGV
EHKEHIKALKASVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPVLTYVGAYEDK
QIAAAIRRELLRDGQTFFIHNKVSDIEKKARELRDLVPEARIVVAHGQMNEEALERTVQG
FWNREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLY
PKGATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGVGFDLYV
RLVGEAVETFKALARGEVPKATDEGPKEIRIDLPVDAHIPEDYINSERLRLEVYRKLAAS
KDNNDLQLAVEEMEDRYGPLPEPVTRLLAVARLRHQARRAGVGDIAVQGTRIKVHPVDLA
DSKQVRLKRLYPGSNYRAAAKAIQLGFPKAGRNVTSPKLRDIELLQWMADFLSAMFELDK
IDVTGAKVGGKNVISVSQ
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
gtggcaacgccgatgctcgccggactactcaaggtcgcggcttccgacccgaaactcaaa
gggcttgccacccaggtaggcgagccacacctgcacatcaccggcatcgaccaagcgcgc
ccgtgggctatcggcacgctggcgaatcaggcgcccgttctcgtcgttaccgccaccggc
cgtgaggccgaggacctcaccgcggagttaaccgcgatgatgggggacaaggttgcccag
ttcccggcctgggaaacccttccacacgaacgcctttcgcccggcgcggatatcgtgggc
cgccgcgcgcaggtgctgcaccgcattgcagaaggcaagctgcgcgtcgtcgtcacagca
gcgcgtggatatagccaaccgatcttgaaaaacgtggaaggccgcagtccgatcagcctg
gccgaggacatggaaatcgagctcgaggccatcgtctcacagctggagtttcgtgcctac
aagcacgtggacatggtggccaagcgcggcgagtatgccgtccgcggcggcatcttggat
gtctttcccacgacgctcgattacccggtgcgtgtggagttctggggcgatgaaattacc
gatatcaggcaattttccgtcgctgatcagcgcgcgattccagagattgaggtcggcgcg
gtggacatcttcccggcgcgtgagcttccgattactgacgacgtcgccaagcgtgcccaa
gaccttgccctgcagcacccgggcaatgctgccctcgtggagcttttgaccaaggtaggt
gagcatattccggccgacggcatggaggcgctgctggcggtgcttagcgacgccccgctg
gtcacccttcccgaattcatgccggagggtacccacgtgctgctggtcgcgccggaaaag
attcgcacccgtattgcggatctagagtccacggacgcggaattcttggctgccggttgg
gaagccgctgccatgggggcggatggtcctttgaccgctgaaggcctggacaccgaggcc
gctagctaccgttcctacgagtctttggaagcaacgtgcgctaatgcgagtttgccgctg
tggacctttgcgccccctggaatgttcatggccgacgaggcgcagaccttgccgctcgag
tatgaaccgggcccgacgccgcgtggtgacattaaggaaatcgacgccatgatggcgcag
ctgctcgcgcatacccgcgacggcggccgtgcggcgtttatcgcgccggctcagggtgcc
atcaagcgcatggttgagcgttttgcggaaaagggcatccgcaccaaggtcgcgactcct
ggctgggagccgacgcctggcgaggtcactttgtatcaggcgctttcacatgcgggcttg
gtattcccgaaggcccgcagcgccggcggctcgcagaaggaacagctcccgttggttgtc
attacggagaccgacctgacgggtaatcgcgtgggcgacatcgccggcgctaagcgacgc
ccagcaaagcgccgcaaccgcgtcgatccgctcgcgctcaaacagggcgaccacgtggtg
cacgaaacccacggcattggccgcttcctcaagatggccgagcgcacgattcagtcgggt
gatgaaacctcccgacgtgagtacatcgtgctggagtacgcttcctcgaagcgcggtcag
ccggccgatcagctctgggtcccgatggactcgctggatctgctctccaagtacaccggc
ggcgagaagccgacgctgtccaagatgggcggctcggactggaagaacaccaagaagaaa
gcccgcgccgcagtccgcgaaatcgcgggcgagctggtggagctttatgccaagcgccaa
gccgcgccgggacaccagtttgcgccggataacccgtggcaggcggagatggaagataac
ttcccatatgtcgagactgaagatcagatgatggccatcgactctgtgaagcaggatatg
gaatccagcgtgccgatggaccgcgtcgtcgtcggcgatgtgggctatggcaagaccgag
gtagcggtgcgcgcagccttcaaggcggtgcaggacggaatgcaggtggcggttttggtg
ccgaccaccttgctggcgcaacagcatgctgataccttccgcgagcgcatgaccggtttc
ccggtcaacattcaggtgctgtcccgctttacgtcgacgaaggacgccaaggagattgtc
tccggtctggcagacggttccgtcgatatcgtcatcggaacgcatcgcctgctgcaaaca
ggtgtgcattggaagaacctagggctaatcgttgtagacgaggagcagcgcttcggcgtg
gagcataaggaacatatcaaggcgcttaaagcctccgttgacgtgctgacgatgtctgcg
accccaattccgcgcaccctcgagatgtccatggcgggcatccgcgagatgtctaccatc
ctgaccccgccggaagaccgccatccggtcctgacttacgtgggtgcttacgaggacaaa
cagattgctgcggcgatccgccgcgagctgctgcgagacggccagaccttcttcatccac
aacaaggtctctgacattgaaaagaaggcccgcgagctccgcgatctcgtgccggaggcg
cgcatcgtcgtggcgcacggccagatgaacgaggaagccctcgaacggacggtgcagggc
ttctggaaccgcgagtacgacgtcctggtttgtaccacgatcgtggaaaccggcctggac
atcgctaatgcgaatacgctcatcgtggaaaacgcgcaccacatgggcctgtctcagctc
caccagctgcgcgggcgcgtgggtcgttcccgtgagcgcggctatgcctacttcctgtac
ccgaagggcgccacgctgaccgagacctcctatgaccgcctggcaaccatcgcccagaac
aatgatctgggcgccggcatggccgtggcgatgaaggacttggagatgcgcggtgccggc
aacgtcttgggcgcgcagcagtccggccacatcgcgggtgtcggcttcgacctttatgtc
cgcttggtcggggaggcagtggagaccttcaaggcccttgcccgtggcgaggttccgaag
gccaccgacgagggaccgaaggagatccgcatcgacctgccagtcgacgcccatatccca
gaggattacatcaactccgagcgcctgcgcctggaggtctaccgcaagctcgcggcctcg
aaggacaataacgatctgcagttggctgtagaagaaatggaagaccgctacggcccgctg
ccggagccagttacccgtttgctggctgtcgctcgactgcgtcaccaggcgcgccgggca
ggcgtgggcgatattgcggtgcagggaacccgtattaaggtccacccggtggatttggcg
gattcgaagcaggtgcgcttgaagcgcctttacccgggctccaattaccgcgccgcggcc
aaggccattcagctggggttcccgaaggccggccgcaacgtcacctccccgaagttgcgg
gatatcgagctgctgcagtggatggcggatttcctttccgccatgttcgaactggacaag
atcgatgtcaccggcgcgaaggtcggcgggaagaatgtgatctctgtaagccagtaa
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integrated database retrieval system
