Thermoclostridium stercorarium subsp. stercorarium DSM 8532: Cst_c16050
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Entry
Cst_c16050 CDS
T02440
Name
(GenBank) ATP dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
css
Thermoclostridium stercorarium subsp. stercorarium DSM 8532
Pathway
css03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
css00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Cst_c16050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
css03400
]
Cst_c16050
Enzymes [BR:
css01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Cst_c16050
DNA repair and recombination proteins [BR:
css03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Cst_c16050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AGC68591
UniProt:
L7VQ94
LinkDB
All DBs
Position
complement(1733274..1734185)
Genome browser
AA seq
303 aa
AA seq
DB search
MDWFEPMEPILTNTIMKGDQWIHQVKWDGIRCLAYKDGNNVRLFTKRGRERSRWYPEITK
EILDLNCKQVVLDGELIVPDEYGKPSFHNIMARDRVSRIDRLRQYIEKYPVWYMVFDILC
KEGQDLRVLPLLERKRMLDETLKSNGNVQAVSDYSDGEALFSIMKEKDMEGIVSKKADSP
YIGGKKHKMWFKTKIIKQMTATVCGVKVKDYRVKSLVIAENRDGKLVPVGNVSSGLSDKD
KITLFNVLPQLAADAAGLYGNVKSDDVIWVKPVLKVIVSFIEREENGSLRHPVLVGFTDE
KTE
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
atggattggttcgagccgatggagcccatacttacaaatactataatgaagggagaccaa
tggattcaccaggtaaaatgggacggaataagatgtctggcatataaagacggcaataat
gtcaggctgtttaccaaacgaggccgtgaacgttcccggtggtaccctgaaataacaaag
gaaattttagatctgaattgcaaacaggtggtactggacggcgaactgatagtaccggac
gagtacggaaaaccttcatttcataatattatggcaagggacagagttagtagaattgat
aggctcagacagtacatcgaaaaatatcctgtatggtatatggtttttgacatactgtgt
aaagaaggtcaggatttaagggtgcttccgctgcttgaaagaaaaagaatgcttgatgaa
acgttaaaaagcaatggcaatgttcaggctgtttccgattattccgatggagaagctctg
ttttcaataatgaaggaaaaggacatggagggcattgtatcaaaaaaagccgacagccct
tatatcggcgggaaaaaacataaaatgtggtttaaaacgaaaataataaagcaaatgacc
gcaacggtgtgcggggtcaaagtaaaggattacagggttaaatcccttgttattgcggaa
aaccgtgacgggaaacttgtgcctgtcggaaacgtatcgtcgggcttatccgataaagac
aaaataacccttttcaatgttcttccacagcttgccgcagatgcggcaggtttgtacgga
aacgtaaaaagcgatgatgtgatttgggtaaaaccggttcttaaagttattgtctcattt
atcgagcgggaagaaaacggaagcttgagacatccggttttggtgggttttaccgatgag
aagacggagtag
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