Colius striatus (speckled mousebird): 104556282
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Entry
104556282 CDS
T08355
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
csti
Colius striatus (speckled mousebird)
Pathway
csti03013
Nucleocytoplasmic transport
csti03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csti00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104556282 (UPF1)
03015 mRNA surveillance pathway
104556282 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csti03019
]
104556282 (UPF1)
Enzymes [BR:
csti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104556282 (UPF1)
5.6.2.5 RNA 5'-3' helicase
104556282 (UPF1)
Messenger RNA biogenesis [BR:
csti03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104556282 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
104556282 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
104556282
NCBI-ProteinID:
XP_010198369
LinkDB
All DBs
Position
Unknown
AA seq
1042 aa
AA seq
DB search
VNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVY
CNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGF
IPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQ
ITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADY
DKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKG
IGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETS
VSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGT
GKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPV
SFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCT
CVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
KAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFD
FQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPY
EGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDP
RRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKP
RKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGMISAGPSHV
TAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRGGRQKNRFGIPGTSQSNLP
NSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALS
QDSTYQGERAYQHGGVTGLSQY
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
gttaatgggcctgatggcattctgcagaatggagcagtggatgataacgtggctaaaacc
agccagctcctggcagagctgaattttgaagaagatgaagaagacacctattacacaaag
gatcttcctgtgcatgcttgcagttactgtggtatccatgaccctgcttgtgtggtttac
tgcaacaccagcaaaaagtggttctgtaacgggcgtggaaatacatctggcagccacatt
gttaatcatcttgtgagagcaaagtgcaaagaggtgactctccataaagatggacctcta
ggagagactgtcttggagtgttataactgtggatgtcgtaatgtgtttctccttggcttt
attccagctaaggcagactctgtggttgttttgctgtgcaggcagccatgtgccagtcag
agcagtttaaaggatattaactgggacagttcacagtggcagcctcttatccaagaccgt
tgtttcctttcttggctggtaaagattccatctgaacaggaacagttgagagcacgtcag
atcacagctcagcagatcaacaaactggaagaactttggaaggaaaatccatctgcaacc
cttgaggacttagaaaagcctggtgttgatgaagaaccacagcatgtcctgctgagatac
gaggatgcttatcaataccaaaatatatttggtcctctcgtcaagcttgaggcagactat
gacaagaaactcaaggagtcccagacccaagataacatcacagtcagatgggacctgggc
ttgaacaagaaaagaattgcctatttcactttgccaaagactgattcagatatgcgtctt
atgcaaggagatgagatctgcttgaggtataagggagacctggcacctttatggaaagga
attggtcatgttatcaaagttcctgataattatggtgatgagatagccatcgagctgagg
agcagcgttggagcgcccgtggaagtgactcataacttccaagtggattttgtgtggaag
tctacttcatttgacagaatgcagagtgctttaaaaacatttgcagtggatgagacttca
gtgtctgggtacatctatcacaagctcttaggtcatgaggtagaagatgtcattattaaa
tgccagttgccaaagcgcttcacagcgcaaggactccctgatctcaaccattctcaggtt
tatgctgtgaagactgtcctgcagcgtcctctgagccttattcagggtccccctggtacc
ggaaagacagtgacatcagccacaatcgtttatcatctggccagacagggcaatggccct
gtgttagtctgtgctccaagtaacatagctgtggatcagttgactgagaagatccatcaa
actggactgaaagtggttcgtctgtgtgctaaaagtcgtgaggcaattgactctcctgtg
tccttcttggcattgcataaccagatcagaaacatggatagcatgccagagcttcagaaa
ctgcagcagcttaaagatgaaactggagaactgtcatctgctgatgagaagcgttaccgt
gccctgaagcgaacagcagagcgtgaattactgatgaacgcagatgtgatctgttgcacg
tgtgtgggagctggggacccgagacttgcaaaaatgcagttccgctccattctgattgat
gaaagcacccaggctactgagccagagtgcatggtgccagttgtcctgggggcaaaacag
ctcattcttgtgggtgaccactgccagctggggcctgttgtgatgtgtaagaaagctgcc
aaggcaggtctgtcccagtctctgttcgagcggctggtggtgctgggcatccggcccatt
cgcctgcaggtgcagtaccgcatgcaccccgcgctcagcgccttcccctccaacatcttc
tacgagggctctctccagaacggggtaactgcagctgaccgtgtgaaaaagggatttgat
ttccagtggccacagccagataagccaatgtttttctacgttacccaaggacaggaagaa
attgccagctcaggcacctcttacttaaacaggacggaggctgccaacgtggagaagatc
accacaaagctcttgaaagctggtgccaaaccagatcagattggcattattaccccttac
gaaggtcaacgctcctacctggtgcagtacatgcaattcagtggctccctgcatacaaag
ctctaccaggaagtggaaattgcaagtgtggatgccttccaggggagagagaaggacttt
attatcctttcctgtgtgagggccaacgaacaccagggaatcgggtttctgaacgacccc
aggcgtctcaacgtagctcttaccagagccaggtatggagtaattattgttggaaaccca
aaagcactgtccaaacaacccctttggaatcacttgctgaattactacaaggagcagaag
gttctggtggagggaccactgaacaacctccgggaaagcctcatgcagttcagtaagccc
cggaagctcgtcaacaccatcaaccccggtgcccgtttcatgaccactgccatgtatgat
gcacgggaggctattattccaggatctgtctacgaccgcagcagtcaagggcgcccatcc
aacatgtacttccaaacccacgaccagatcgggatgatcagcgcggggcccagccacgtc
actgccatgaacattcccatccccttcaacctcgtcatgccccccatgccacccccaggc
tactttggccaagccaacggcccagctgcaggacgtggtgcacctaaaggcaagactggt
cgtggtgggcgtcagaaaaaccgctttgggattcctggaactagtcagtcaaaccttcca
aacagtcaggcgagccaagatgtggtgtcccagcctttctcccagggcccactgacccag
gggtatatctccatgagtcagccctcacagatgagtcagcctgggctctcccagccagaa
ttatcccaggacagttaccttggtgatgagtttaaatctcagatcgacgtggcgctgtcg
caggactcgacgtaccagggtgaacgtgcttatcaacacggtggcgtgacgggactgtca
cagtattag
DBGET
integrated database retrieval system
