KEGG   Stygiolobus caldivivus: KN1_16870
Entry
KN1_16870         CDS       T07597                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
csty  Stygiolobus caldivivus
Pathway
csty03030  DNA replication
csty03410  Base excision repair
csty03420  Nucleotide excision repair
csty03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:csty00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    KN1_16870
   03410 Base excision repair
    KN1_16870
   03420 Nucleotide excision repair
    KN1_16870
   03430 Mismatch repair
    KN1_16870
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:csty03032]
    KN1_16870
   03400 DNA repair and recombination proteins [BR:csty03400]
    KN1_16870
Enzymes [BR:csty01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     KN1_16870
    6.5.1.6  DNA ligase (ATP or NAD+)
     KN1_16870
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     KN1_16870
DNA replication proteins [BR:csty03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    KN1_16870
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     KN1_16870
DNA repair and recombination proteins [BR:csty03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     KN1_16870
   NER (nucleotide excision repair)
    Other NER factors
     KN1_16870
   MMR (mismatch excision repair)
    Other MMR factors
     KN1_16870
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: BCU70390
UniProt: A0A8D5U695
LinkDB
Position
complement(1757672..1759477)
AA seq 601 aa
MMEFKLIAEYFDKLERITSRIQITSLLTDLFKKSDKAVIDKVVYIIQGKLWPDFYGYPEI
GLGEKLMIKALSIGINVKEDVIDSELKKIGDLGEVAYRLKKSSGGTTILSFLGASSSSPL
TVEEVYNSLSKIALAEGEGSRDVKIRSLAGLLKKADPLEAKFIIRFIDGRLRVGIGDATI
MDALANAFGGGTHTRPIIERAYNLRADLGNIAKVVASEGIEALKNLKPEVGIPIRPMLAE
RLNDPVEILSKVGGQALVDYKYDGERAQIHKKGNDVYIFSRRLENITKQYPDVRDFVKDY
VVADEVIVEGEIVAVDKESGEILPFQELMHRKRKNDIHEAVEDYPVNVYLFDLMYYNGED
YTLRPLPERRKKLEEIVKPNDKLHIAHHIFTDDVEKLKEYFYQAISEGAEGIMVKAVGRD
SIYQAGARGFLWIKLKRDYQSEMADSVDLVVVGAFYGRGKRGGKLSSLLMAAYDPESDIF
YTVCKVASGFSDAELDELQKKLTEIKLDSKDPRVESELDPDIWVKPKYVAEIIGAEITLS
PQHTCCKGEVSKEAGLSIRFPRFIRWRDDKSVEEATTPQEILEMYKLKLKKKEEGSESET
P
NT seq 1806 nt   +upstreamnt  +downstreamnt
atgatggagtttaaactaatcgctgaatactttgataagctggagagaataacgtctagg
atacaaattacgtcgttattaacagacctttttaaaaaatctgataaagctgtcatagat
aaggtagtatatattattcaagggaaactatggccagacttttatggctatcccgaaatc
ggtctaggagaaaaactaatgataaaggcactttctatcggaattaacgtgaaggaggac
gttatagattctgagctgaagaagataggtgatctaggtgaagtagcatataggttaaag
aaatcaagtggtgggactacaatactgtcatttttaggggcatcctcttcgtctccgtta
actgtggaagaggtatataattctctaagtaaaattgcgttagctgaaggagaagggagt
agagatgtgaaaatccgttccctagccgggctgctaaaaaaggcagacccgttagaggca
aagtttatcatcaggttcatagacgggaggctaagggtcggtataggggatgctactata
atggatgccctggctaatgcctttggtggaggtacccatactcggcctataatagagagg
gcctataacttaagagctgatttaggcaatatcgctaaagtagtagcatcagagggcata
gaagcacttaagaacctaaagccagaagtcggaataccgataaggcctatgctagcagaa
aggctaaacgatccggtcgagatcctttctaaagtagggggtcaagcattagttgattac
aagtatgatggagaaagggctcaaatccataaaaagggcaacgatgtgtatatattctca
cgaagactagagaatattactaaacaatatcccgatgttagggactttgttaaagactac
gtcgttgctgatgaggtcatagtagagggggaaatagtagctgtagataaggaaagcggt
gaaatattaccattccaagaactaatgcataggaaaaggaaaaatgacatccacgaggca
gtagaagattatcctgtcaatgtatacttgtttgacctcatgtattataatggtgaggat
tacactttaaggccattaccggagaggagaaagaagctagaggagatcgtaaaacctaac
gataaattacatattgcacatcacatctttactgatgacgtagagaaattaaaggaatat
ttttaccaagcgatttctgagggtgctgaaggtataatggtaaaagccgtaggtagggac
tctatttaccaagccggtgctagggggttcttgtggataaaactgaagagagattaccaa
agtgagatggctgatagcgtggatctagtagtagtaggtgctttttacggaaggggaaaa
aggggaggtaagctaagttcattattaatggcagcttacgatccagagtcagatatattt
tacactgtatgtaaagtagcctcgggtttcagtgatgcagaactagacgaactgcagaag
aaactgacagaaattaaactagattcaaaggatccaagagtcgaatcagaacttgatcca
gacatatgggttaaacccaaatatgtagctgaaataataggggcagagatcactctatca
cctcaacacacctgttgtaaaggtgaagtgagtaaggaggcgggtctatctattaggttt
ccacgctttataaggtggagagacgacaagagtgttgaggaggctacaacacctcaagaa
atattagaaatgtacaaattaaaacttaagaagaaagaggaaggaagcgagtccgagaca
ccttaa

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