Cytobacillus suaedae: IM538_05975
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Entry
IM538_05975 CDS
T08143
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
csua
Cytobacillus suaedae
Pathway
csua03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
csua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
IM538_05975 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csua03400
]
IM538_05975 (ligD)
Enzymes [BR:
csua01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
IM538_05975 (ligD)
DNA repair and recombination proteins [BR:
csua03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
IM538_05975 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QOR68836
LinkDB
All DBs
Position
complement(1136226..1137488)
Genome browser
AA seq
420 aa
AA seq
DB search
MLRSNKVIGKGIDQKLNLSNQTKKQSGRFFIIGFDKKKETFDVAVLSKKDIKKLGAFSDG
LSEEEKTILLQVISNNSQSETSSYLHVEPGICIELEYTGFENGHIASPVFKQFLFDIKWK
DCTWENLLSTINGITISHPDKPLWKDNDVTKIDYIQYLNEISPYMLPFLQNRLLTVIRYP
HGMFGEKFYQKNCPDYAPEFIQTRMHENINYIVCNNDETLIWLGNQLAFEFHIPFQTIHS
TGPSEIVFDLDPPSREYFPLAVKAAQILKEVFDGLKLITYIKTSGNKGLQIYIPLPENQF
NYDQTRRFTEFIANFLVTKEPSLFTIERLKKNRHNKLYVDYLQHAEGKTIVAPYSVRGND
GGYVATPLFWDEVTEQLSIEDFPLNRIIPRIQERGCPLSTYFEAKEKQQFQPVLDFLSST
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atactaagaagcaacaaagtaataggcaaagggattgatcagaaattgaatttaagtaat
caaaccaaaaaacaatccggacgttttttcattatcggttttgataaaaaaaaggaaact
tttgatgttgcagtcttgtctaaaaaggacattaaaaagctaggggcattttcagatggc
ctctctgaagaagaaaaaacaattctcttacaggttatctcaaacaattcacaatctgag
acaagttcatatcttcatgttgaacctggaatctgtatagagcttgaatatacagggttt
gaaaatggtcacattgcatctcccgttttcaaacaatttctctttgatattaagtggaag
gattgtacttgggaaaatctcttatcaacaattaacgggataaccattagtcatcccgat
aaaccactttggaaagacaatgatgttacgaaaatcgattatattcaatacttaaatgaa
atctcaccttacatgcttccttttttacaaaatagattgttaaccgtcattcgctatcct
catgggatgtttggagaaaagttttatcaaaaaaactgtccggattatgcgcctgagttt
attcaaactaggatgcatgaaaacattaattatattgtttgcaacaatgatgaaacatta
atctggcttggaaatcagcttgcttttgaatttcacattccatttcaaacaatccattcg
actggaccatcggaaattgtctttgatcttgacccaccatctagagagtattttcctctc
gccgttaaggctgctcaaattttaaaagaggtttttgatggattaaagctaattacatat
atcaaaacatctggtaacaaaggcttacagatttatattcctctaccagaaaatcaattt
aactatgaccaaacgaggcgttttacagaatttattgctaactttttagtaacaaaggag
ccctcgttatttacaattgagcgtttaaaaaagaatcgacataataagttatacgttgac
taccttcagcatgcagaaggcaaaaccattgttgcaccctattcagttagagggaatgat
ggaggatatgttgctactcctctgttttgggatgaggttactgaacagctttcgattgaa
gactttccgctaaatcgtatcattccaaggattcaagaaaggggctgtcctctttcaacc
tactttgaggcaaaggagaaacaacaatttcagccagttcttgattttctcagttcaaca
taa
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