Corynebacterium suedekumii: QP029_08375
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Entry
QP029_08375 CDS
T09531
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
csue
Corynebacterium suedekumii
Pathway
csue03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
csue00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QP029_08375 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csue03400
]
QP029_08375 (mfd)
Enzymes [BR:
csue01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QP029_08375 (mfd)
DNA repair and recombination proteins [BR:
csue03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QP029_08375 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WIM71633
LinkDB
All DBs
Position
1667736..1671377
Genome browser
AA seq
1213 aa
AA seq
DB search
MLAGLLKVAASDPKLKGLISHVGEQQLHITGIDQARPWAVAALAHHAPVLLVTATGREAE
DLTAELRAMMGDTVAWFPSWETLPHERLSPGVDIIGQRARVLDHLDELRVVVTAARGVCQ
PLLESVDGREPVRLRRGADHDFSALTEELVFRAYSHVDMVAKRGEFATRGGILDIFPTTA
DLPVRVEFWGDEVTEIRPFSVADQRTIPEVELDAVEIYPARELPITDAIAARAAELSRDH
PGNATLVELLAKISDRIPADGMEALIPALVDTPMRTLPELMPDGTHVVLLAPEKIRTRIA
DLAATDAEFLAAGWEAAAMGASGPVAAEGLDLDASSYRSYESLEAGARKAGQPWWTFAPP
GMFEASDADTLPLDIEPGPTPRGDAAAIDEMMSLLLAHTTAGGRAAFIAPAQGAIKRMVD
RFAEKGIPTRVATPGWEPTPGEVTLYQALSHAGVVFPRVRKHRDAAAMPLVVVTETDLTG
NRVGDIAGAKRRPARRRNKVDPLALKTGDHVVHETHGIGRFLKMAERTIKAGDETSRREY
IVLEYAASKRGQPADQLWVPMESLDLLSKYTGGESPTLSKMGGSDWKNTKKKARAAVREI
AGELVELYAKRQAAPGHRFGPDTPWQAEMEDNFPFVETEDQMQAIEAVKADMEQDVPMDR
VIVGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHLSTFIERMQGFPVTIRGLS
RFTSTTESKEIIAGFADGAVDIVIGTHRLLQTGVHWKNLGLIIVDEEQRFGVEHKEHIKA
LRTAVDVLTMSATPIPRTLEMSMAGIREMTTILTPPEDRHPVLTYVGAQEDKQIAAAIRR
ELLRDGQVFFIHNKVSDIEKKARELRDLVPEARIVVAHGQMGEEQLEQTVQGFWDREYDV
LVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGATLTE
TSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGVGFDLYVRLVGEAVE
VYKSLARGEVPDATDTGPKEIRIDLPVDAHIPESYINSERLRLEVYRKLAASADDTDLQL
VIEEMEDRYGPVPEEVSRLLAVARLRHQARRAGISDIIVQGTRIKIHPVDLPDSKQVRLK
RLFPGSTYRAAAKAIQLPFPKVGNGAGKPNLRDVELLQWVADTLSTMFDIDPVDVSGGAG
AAGKKKNVVSFSG
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgctcgcggggctgctcaaggtggcggcctcggacccgaagctcaaggggctgatcagc
cacgtcggtgagcagcagctgcacatcacgggcatcgaccaggcccgtccctgggcggtc
gctgcgctggcgcaccacgcgccggtgctgctggtcaccgctaccggccgcgaggccgag
gacctcaccgccgagctgcgcgccatgatgggggacacggtcgcctggttcccctcttgg
gagacgctgccgcatgagcgcctgagccccggcgtggacatcatcggtcagcgggcgagg
gtcctcgaccatctcgatgagctgcgggtggtcgtcaccgcggcgcgtggcgtgtgccag
ccgctgctcgaatccgtcgacgggcgggagccggtgcgcctgcgccggggggccgaccac
gacttctccgccctgacggaggagctggtcttccgcgcctacagccacgtggacatggtg
gccaagcgcggcgagttcgccacccgcggtggcatcctcgacatcttccccacgaccgcg
gatctgcccgtgcgtgtcgagttctggggcgacgaggtcaccgagatccgccccttctcc
gtcgccgaccagcgcaccatccccgaggtggagctcgacgcggtggagatctacccggcc
cgtgaactgcccatcaccgacgccatcgccgcccgcgccgccgagctttcccgggaccac
ccgggcaacgccaccctcgtcgagctgctggcgaagatctccgaccgcatcccggcggac
gggatggaggcgctgatccccgcgctcgtcgatacgccgatgcggaccctgcccgagctc
atgccggacggcacgcacgtggtgctgctcgcgccggagaagatccgcacccgcatcgcc
gacctcgccgccaccgacgccgaattcctcgccgccggctgggaggccgccgccatgggt
gcctccggccccgtcgccgcggagggcctcgacctcgacgcctcctcctaccgctcctac
gagtccctcgaggccggcgcccgcaaggccggccagccgtggtggacgttcgccccgccc
ggcatgttcgaggcctccgacgccgacaccctcccgctcgacattgagcccggccccacc
ccgcgtggcgacgccgccgccatcgacgagatgatgtccctcctgctcgcccacaccacc
gccggcggacgcgccgccttcatcgcccccgcccagggcgcgatcaagcgcatggtcgac
cgcttcgcagagaagggcatccccacccgggtggccacccccggctgggaacccaccccc
ggtgaggtcaccctctaccaggcgctcagccacgccggcgtggtgttcccgcgggtacgc
aagcaccgcgacgccgccgccatgcccctggtcgtggtcaccgagaccgacctcaccggc
aaccgcgtcggcgacatcgccggcgcgaaacgacgccccgcccgccgccgcaacaaggtc
gacccgctggccctgaagaccggcgaccatgtcgtccacgagacccacggcatcggccgc
ttcctcaagatggccgaacgtaccatcaaggccggggacgagacctcgcgtcgcgagtac
atcgtgctggagtacgcggcgtcgaaacgcggccaacccgccgaccagctgtgggttccc
atggaatccctcgacctgctgagcaagtacaccggcggcgaatcccccaccctgtcgaag
atgggtggctccgactggaagaacaccaagaagaaggcccgcgccgccgtccgcgagatc
gccggcgaactcgtcgagctctacgctaaacgccaggcggcccccggccaccgcttcggc
cccgacaccccctggcaggcggagatggaggacaacttccccttcgtcgagaccgaggac
cagatgcaggccatcgaggccgtcaaggccgacatggaacaggacgtgcccatggaccgc
gtcatcgtcggcgacgtcggctacggcaagaccgaggtcgccgtccgcgccgccttcaag
gccgtccaggacggcaaacaggtcgccgtcctcgtccccaccaccctgctcgcccagcag
cacctgtccaccttcatcgaacgcatgcagggcttccccgtcaccatccgcggcctgtcc
cgcttcacctccaccacggagtcgaaggagatcatcgcagggtttgccgacggcgccgtc
gacatcgtcatcggcacccaccgcctcctgcagaccggcgtccactggaagaacctcggc
ctcatcatcgtcgacgaggagcagcgcttcggcgtcgaacacaaggaacacatcaaggcc
ctgcgcaccgccgtcgacgtgctcaccatgtccgccacccccatcccgcgcaccctcgag
atgtccatggccggcatccgcgagatgaccaccatcctcaccccacccgaggaccgccac
cccgtcctcacctacgtcggcgcccaggaggacaagcagatcgccgccgccatccgccgc
gaactcctccgcgacggccaggtgttcttcatccacaacaaggtctccgacatcgagaag
aaggcccgcgaactccgcgacctcgtacccgaggcccgcatcgtcgtcgcccacggccag
atgggcgaggaacaactcgaacagaccgtccagggcttctgggaccgcgaatacgacgtc
ctcgtgtgcaccaccatcgtcgaaaccggcctcgacatcgccaacgccaacaccctcatc
gtcgagaacgcccaccacatgggcctgtcccagctccaccagctccgcggccgcgtcggc
cgatcgagggaacgcggctacgcctacttcctctaccccaagggagccaccctcaccgag
acctcctacgaccgcctggccaccatcgcccagaacaacgacctcggtgccggcatggcc
gtcgccatgaaggacctggagatgcgcggcgccggcaacgtcctcggcgcccaacagtcc
ggccacatcgccggcgtcggcttcgacctctacgtccgcctcgtcggcgaggccgtcgag
gtgtacaagtccctcgcccgcggcgaagtccccgacgccaccgacaccggacccaaggag
atccgcatcgaccttcccgtcgacgcccacatccccgagtcctacatcaactccgaacgc
ctgcgcctcgaggtgtaccgcaaactcgccgcctcagcggacgacacggacctccagctc
gtcatcgaggagatggaggaccgctacggccccgtccccgaggaggtctcccggttgctg
gcggtggcccggctgcgccaccaggcccgccgcgccggcatctccgacatcatcgtccag
ggcacccgcatcaagatccaccccgtcgatctgcccgactccaaacaggtccgcctcaag
cggctgttccccggttccacctaccgggcggccgccaaagcgatccagttgccgttcccc
aaggtcggcaacggtgctggtaagccgaacctgcgtgacgtcgaacttctccagtgggtg
gcagacacgttatcgacgatgttcgacatcgaccccgtcgacgtcagtggcggcgccggc
gcggccggaaagaagaagaacgtggtcagcttcagcgggtag
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