Cucumis sativus (cucumber): 101204319
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Entry
101204319 CDS
T02486
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
101204319
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csv03400
]
101204319
Enzymes [BR:
csv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
101204319
DNA repair and recombination proteins [BR:
csv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
101204319
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
PRF
Motif
Other DBs
NCBI-GeneID:
101204319
NCBI-ProteinID:
XP_011648959
LinkDB
All DBs
Position
2:5143234..5162321
Genome browser
AA seq
1215 aa
AA seq
DB search
MPEPIKFAVLSSLFDWIQRSKSSAKKRSKFRKFLDTFCSPSHYFSAIRLILPSLDRERGT
YGLKESVLATCLIDALGMSRDSEDALRLINWRKGGAKTGANAGNFALVAAEVLQRRQGMT
PGGLTINELNDLLDRLASGENRAEKTAVLSTLIQKTNAQEMKWIVMIILKDLKLGVSEKS
IFHEFHPDAEDLFNVTCDLKLVCEKLRDRRQRHKRQDIEVGKAVRPQLASRVSNANAAWK
KLHGKEVVAECKFDGDRIQIHKNGTEVHYFSRNFLDHSEYGHGMSDVIVQNVRSARCILD
GEMLVWDKSLNRFAEFGSNQEIARAAKDGFDSNRQLCYVAFDVLYVGDTSVIHRSLKERH
ELLRDVVKPVKGQLEVLVPNDGLNSDCAGYPSWSIRAYNVDDVERFFKSTIENRDEGIVI
KDLGSKWEPGDRSGKWLKLKPDYVRAGSDLDALIIGGYYGSGRRGGEVAQFLMGLAERPP
SNAYPRRFVSFCRVGTGLTDEELDAVVNKLKPYFRKSEYPRKTAPSFYQVTNNSKERPDV
WIESPEKSIILSITSDIRTIKSEVFAAPYSLRFPRIDRVRYDKPWHECLDVQSFVELVHS
SNGTTQRGTNNSGRQDSKGKYIKSIGKGRKKSVSVVPSHLLQTDITGITEDSLIFSNMLF
YIVNVPPTHSLDSLHKLIVENGGTFSMNLNNSVTHSVAADSKAGIKYEAAKRHGDVIHYS
WVLECCSQKKLLPLKPKHFLFLSGNSKKKLEKEIDEFADSYFWDLELSELKQLLSNLSIS
EDVKAIDYYRGKYCPKQDWCMFVGCQIYFLPLRLSLKSDWGILLELSIRRLKVEVSFRGG
KVSDDPVSATHIIVFEIPGAPVRYETVLKSCNEAEKHAMLKDKIHIIAHQWLEDCLEMAQ
RLQEDSYNLNPNGKRSIENINFGMDSDTPLALEDQENPQIPCPSKEYKDQGRNEAASGQQ
MLSHSTERYDGKKRGRPATRSMQKAKSDVEQVRRARTRKAKGPAKISEVESDISDHTDEK
TKAETGNIGTLCTENSEKHEFKTLENEISNSKKRGRPPAGNAQREKAEAGKIRRTRAHIA
KGSANIGGINNSDSSDEANAEESKRGKDENEKTNEFKMLEDCNAKQKGKAIEEVRADSKS
VEKPEKLEVMKDPLEAMLLDMVPSLGMSGTKSSISSSSSSSTVVEEKKPFVENKSEAVKK
KVSYKDVASELLKDW
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgccggagcccatcaagttcgctgttctttcaagtctctttgattggattcagcgtagc
aaatcttccgccaagaagcgttccaagttccgtaagtttctcgacactttctgctctcct
tctcactatttttccgccatccgcttgattcttcctagccttgatcgagagcgcggcacc
tatggtctcaaggaatctgtacttgccacttgcctcattgatgctctcggcatgtctaga
gactccgaggacgctcttcgtcttatcaactggcgtaaaggtggtgctaagactggtgct
aatgccggtaatttcgctcttgttgcggctgaggtattgcagcgcaggcaaggaatgacc
cctggtggtctaacgattaatgagttgaatgatttgctggatcgtttggcttcaggtgaa
aacagagcagagaaaacggcagttttgtctacccttatacagaagacaaatgcacaggaa
atgaaatggattgtcatgataatcctcaaagatctgaaactgggagtcagtgaaaagagc
atttttcatgagtttcatccagatgcagaagacttgttcaatgtcacctgtgacttaaaa
ttggtttgtgaaaaactaagggatcgtagacaaaggcataagcgtcaggacattgaagtt
ggaaaagctgtgcgaccccagctggcttcaagagtgtccaatgcaaatgctgcatggaaa
aagcttcatgggaaggaagttgtagctgaatgcaagtttgatggtgatcgtattcaaatt
cataagaatggaactgaagtacactacttttcaaggaactttctcgatcactcagaatat
ggacatggaatgtctgatgttattgttcaaaatgttcgttccgctaggtgtatacttgat
ggtgaaatgttggtgtgggataagtctttaaatcgttttgcagagtttggttcaaaccag
gaaatagcaagggcagcaaaggatggatttgacagcaatcgtcagttatgctatgttgcg
tttgatgttctttatgttggagatactagtgttattcacaggagtttgaaagaaagacat
gagcttctcagggatgttgtcaagcctgtgaagggtcaattggaagtcttagtacctaat
gatggtcttaatagcgactgtgctggctatccttcttggtcaatcagagcttataatgtt
gatgatgtggaaagattctttaagagtacgattgaaaatagagatgaaggtattgttatt
aaggacctgggttctaaatgggaacctggcgaccgtagtgggaagtggttaaaattgaag
cctgactacgttcgtgctggatctgatttggatgctctcatcataggaggttactacggc
tctggacggcggggtggggaggtcgctcaatttttgatgggtcttgctgagcgtccaccc
tcaaatgcatatcctagacggtttgtttccttctgcagagtaggaactggacttactgat
gaggagttagatgctgttgtaaataaactgaaaccttattttaggaaaagtgaatatcca
aggaagactgcacccagcttttaccaagttacaaataattcaaaagaaagaccagacgtt
tggattgaaagcccggagaagtcaatcattctttccattaccagtgatatacgaacaata
aaatctgaggtctttgcagcaccatatagtctcagatttccacgcatagaccgtgttcga
tatgacaaaccttggcatgaatgtcttgatgttcaatcttttgtggagctggttcattca
agtaatggtaccacacaaaggggcacaaataatagtggtcggcaagatagtaaagggaag
tacattaagtccattggaaagggaaggaaaaagagcgtttctgttgttccttctcattta
cttcagactgatattacaggcattacagaggactccttgattttctcaaatatgttattt
tacattgttaatgtgcctccaacccattctctcgattccttgcacaaattgatagtggag
aatgggggtacattctctatgaatttgaataattctgttacacattctgtagcggccgat
agcaaagcaggcatcaaatatgaagctgccaagcgtcatggagatgttattcattattct
tgggttttggaatgttgttcccaaaagaagctgctacctctaaagcctaagcattttctc
tttctctctggtaactcaaagaaaaaattggagaaggaaattgatgaatttgctgactcg
tatttctgggatcttgaactttcagaactgaaacagctattaagcaaccttagtatatca
gaagatgtgaaagccattgattactataggggaaaatattgtccaaaacaagattggtgt
atgtttgttgggtgccaaatctactttctcccgttaagattatctttaaaatctgattgg
ggcattctgttggagctttcaataaggaggttgaaggttgaagtttccttcagaggtgga
aaagtcagtgatgaccctgtttctgctacccacattatagtctttgaaataccgggagcg
cctgtaagatatgaaacagtgttgaaaagttgcaatgaagcagaaaaacatgccatgttg
aaagataagattcatattattgcacatcagtggttggaagactgtttggagatggcccaa
aggttgcaagaagattcatataacttgaatcccaatgggaagaggtccattgaaaatata
aattttggcatggattctgacacaccattggccttggaagatcaagaaaatccgcaaatt
ccctgtccttccaaggagtacaaagatcaaggaagaaacgaagctgcttcaggacaacag
atgctctcccattcaactgagagatatgatggaaagaaaagaggcaggcctgctacaagg
agcatgcagaaagcgaaatcagatgttgaacaggttcgaagagctcgaactcgaaaggcc
aaggggcctgcaaaaataagtgaagttgagtcagacatcagtgaccatactgatgaaaaa
acaaaagctgaaactggaaatattggaacattatgcactgaaaactcagaaaagcacgag
tttaaaacattagaaaacgagatatctaactcaaagaaacgaggaagacctcctgcaggg
aatgcacagagagagaaagcagaggctggaaaaattcgaagaactcgggcacatattgcc
aagggatctgcaaatataggtggtattaacaacagtgactcttccgatgaagcaaacgca
gaagaatctaaaagggggaaagatgaaaacgagaaaacgaatgagtttaaaatgctagaa
gactgcaatgcaaaacaaaaaggcaaagccattgaagaagttcgtgcagactccaaatct
gtggaaaaacctgagaagcttgaagtgatgaaggatccacttgaagcaatgttattagat
atggttccaagtcttggaatgagtggaactaaaagtagtattagtagtagtagtagtagt
agtactgttgttgaggagaagaaaccatttgtagaaaacaaaagtgaggcagttaagaag
aaagtgagctataaggatgttgccagtgaactgcttaaggattggtaa
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