Cucumis sativus (cucumber): 101206311
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Entry
101206311 CDS
T02486
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101206311
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csv03021
]
101206311
03019 Messenger RNA biogenesis [BR:
csv03019
]
101206311
Transcription machinery [BR:
csv03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
101206311
Messenger RNA biogenesis [BR:
csv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
101206311
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
VHS
Ribonuc_2-5A
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
101206311
NCBI-ProteinID:
XP_011653866
UniProt:
A0A0A0LVG0
LinkDB
All DBs
Position
1:complement(8870495..8878622)
Genome browser
AA seq
1007 aa
AA seq
DB search
MTRFMESEKLLISRGNPRNSVYPSDRPIPTTSGRTMPNELPQKPAPSIAHRFRAQLKQRD
DEFRVSGHDVVPLPTAEDIVQLYDLMLSELTFNSKPIITDLTVLADEQREHGKGIADLIC
ARILEVPVDQKLPSLYLLDSIVKNVGHEYISYFASRLPEVFCEAYRQVHPNLHNAMRHLF
GTWATVFPPSIIRKIEAQLSQLTAQESSGLTSSRASESPRPTHGIHVNPKYLRQLEHSVV
DKHSQDSRGTSAIKVHDKKLASGYEEYDYDHADALEHGGPQGFHSMGSMGHDSFSLGTNK
ANIKLAKSSLSSRIGPHRPLQSVGDEHETVRASPSQNVYDYEGSKMIDRNEDTNKWRRKQ
YPDDNLNGLESTSSYNIRNGHALEGPRALIEAYGSDKGKGYLNDNPPQAEHFSINVIDNK
ATPVTWQNTEEEEFDWEDMSPTLADRGRNNDMLKPPVPPSRFRTRSGFERSNAMPIEPGM
RSNWSSPVRLPGIDSSIVIEDVVHSTPDNWNMHNHISQTSQNLMNNKGQGRNFQMPMLGR
GITSSVGEKMSPYGDKLLTNDALHRPTNIASRLGSSGLDSSMESQSIVQSMGPRHPLNLS
NSCPPSRPPIFPVPRHNASQFESLNGSNSFMNCANRTFLPEQQMNNLRNKELSLTTKSPQ
VGNQHTGHIPLTRGNQLQGMPLKPQFLPSQDMQDNFSGSAVPPVLPHLMAPSLSQGYISQ
GHRPAISEGLSSSAPIGQWNLSVHNSSSNPLHLQGGPLPPLPPGPHPTSGPTIPISQKVP
GQQPGTAISGLISSLMARGLISLNNQASVQDSVGLEFNPDVLKVRHESAITALYADLPRQ
CMTCGLRFKTQEEHSNHMDWHVTKNRMSKSRKQKPSRKWFVSISMWLSGAEALGTEAVPG
FLPAEVVVEKKDDEELAVPADEDQKTCALCGEPFEDFYSDETEEWMYRGAVYMNAPDGQT
AGMDISQLGPIVHAKCRTETNVVPSESFDQDEGGVSEEGNRRKRLRS
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
atgacccgtttcatggaatcggaaaagctcttaatttcacgaggaaaccctagaaattct
gtttacccatctgaccgcccaatccccaccaccagcggcaggactatgcccaatgagttg
ccacaaaagcctgccccttccatagctcaccggtttagagctcagttaaagcagcgggat
gatgaatttagggtttctggccatgatgttgtgccccttcctaccgctgaggatattgtg
cagttgtatgacctcatgttgtcggagctcacttttaattcgaagcccatcattacggat
ctcactgttcttgctgatgagcagagagaacatgggaagggcattgccgacttaatttgt
gcgcggattctcgaggttccagttgaccaaaaacttccttcattatatctattagacagc
attgttaagaatgttgggcacgagtacattagttatttcgcgtctcgtttacctgaggtg
ttttgcgaggcttacaggcaagttcatcctaatttgcacaatgcaatgcgccacctcttt
gggacttgggcaactgtgtttccaccatccatcattcggaagattgaagctcaactttct
cagttaacagcccaagagtcatcaggtttgacatcctcaagggcttctgaatctcctcgg
ccaactcatggtattcatgtcaatccaaaatacttgcgacagctggaacactcagtggtg
gataaacatagccaagattcaagagggacctcagctataaaagttcatgataaaaagctt
gcttctggatatgaagagtatgactacgatcatgcggatgctcttgaacatggtggacct
caaggatttcattcaatgggaagcatgggccatgattctttttcccttggaacaaataaa
gcaaatataaagctagcaaaatcatctctgtcttcaagaattggaccccatagacctcta
caatcagttggtgatgaacatgaaacggtcagagcctcaccctcgcagaatgtctatgat
tatgaaggttcgaagatgattgatagaaatgaggataccaataaatggaggagaaagcaa
tatcctgacgataatctgaatggacttgaaagtacttcttcatataatattagaaatgga
catgcacttgagggaccaagagctttaatcgaagcatatggaagtgataaaggaaaaggt
tatttaaatgacaatccaccccaagctgaacatttttctatcaatgttatagacaacaag
gcaactccggtaacatggcagaacactgaagaagaagagtttgattgggaagatatgagc
cccacattagctgatagaggccgaaataatgatatgttgaaaccacctgtcccaccttca
agatttaggacaagatcaggatttgaaagatcaaatgctatgcctatagagccaggaatg
agaagcaattggtctagtccggttcggctaccgggtattgattcctccatagttattgaa
gatgtggtccattcaacacctgataattggaatatgcacaatcacatttctcagacatct
cagaacctcatgaacaataaaggacagggaagaaatttccagatgcctatgttggggaga
ggcataacttcctctgttggtgagaagatgtctccttatggtgacaagcttttgaccaat
gatgctttacataggcccactaacattgcttcgagattgggttcttctggtctcgactct
agcatggagtcgcaatcaattgtacaatctatgggcccaaggcatcctctgaatctttct
aactcttgcccaccctctagacctccaatttttcctgtaccaagacacaatgcaagtcag
tttgagtctttaaatggtagcaattctttcatgaattgtgcaaataggacttttttgcct
gagcagcagatgaataacttgagaaataaggagctaagtcttacaactaagtcgccacaa
gttggcaaccaacatactgggcatattcctttaactcggggaaaccaattgcagggcatg
cctttaaaaccgcaatttctaccatctcaggacatgcaagataattttagtggatcagca
gtacctccagtgttaccacatttaatggcaccatctttgagtcaaggatacatttcacaa
ggacatcgccctgctattagtgagggtttgtcaagttctgcccctattggacaatggaat
ttgtctgttcataatagctccagtaaccctttgcatttacaaggagggccgctgccacct
cttccacctgggcctcatcctacttctggtccgactatacctatctctcaaaaggttcct
ggacagcaaccgggaactgcaatttctgggctaataagttctctcatggcccggggttta
atctcattaaacaatcaagcttctgtacaggattctgttgggttagaattcaatccagat
gtactcaaggtgcgacatgaatctgcaatcactgctctatatgctgatcttcctcgacaa
tgcatgacctgtggtcttcgattcaagacccaggaagagcatagtaatcatatggattgg
catgtcactaaaaatcgtatgtcgaaaagtaggaagcaaaagccttctcgcaaatggttt
gtaagtattagcatgtggcttagcggtgcagaggctttaggaacggaggcagttccagga
tttttgcctgctgaggttgttgtagagaaaaaagatgatgaagaactggctgttcctgct
gacgaggatcagaagacatgtgcattatgtggagaacctttcgaggatttttacagtgat
gaaacagaggagtggatgtatcggggtgctgtctacatgaatgcacctgatggacaaaca
gccggcatggatatttctcagttagggcccatagtgcatgctaaatgcaggaccgaaact
aatgtggttccctctgaaagttttgaccaagatgaagggggagttagtgaagagggtaat
cgaagaaaacgattgcggagctag
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