Cucumis sativus (cucumber): 101208317
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Entry
101208317 CDS
T02486
Name
(RefSeq) regulator of nonsense transcripts UPF3 isoform X2
KO
K14328
regulator of nonsense transcripts 3
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03013
Nucleocytoplasmic transport
csv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101208317
03015 mRNA surveillance pathway
101208317
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csv03019
]
101208317
Messenger RNA biogenesis [BR:
csv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
101208317
mRNA cycle factors
P-body specific factors
101208317
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
101208317
NCBI-ProteinID:
XP_004141560
LinkDB
All DBs
Position
5:31732947..31739678
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AA seq
506 aa
AA seq
DB search
MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF
TRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE
FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR
KVKRGGAASSRKPESNSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSSAI
GISDVGTADFGKKKILLLKGKERDISHLQSATSSGNSPASASKHNHRREAGGGVIRSILL
NNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPTNARSGSNDISSNEPNPSGSEGDGKRA
SDNKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVPQSSHLL
SDSVEAFRGEMKEDIHGSRTGDVTTIVSGRNSSVENGSVRHVGRRGAGHVMKDDGSLNPN
EGKPSKRGVAGGHEKQVWVQKSSSGS
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgaaggacccgttggagaggaccaaagtagtgattaggcacttgcccccttctctttct
cactcagatctcttccaccatattcatgatcgattcgctggtcgctttaattggtcttac
tatcgtcccggaaagaccagtcagaaggaccagaggtacgctcgagcctacatagacttt
accagacctgaagatgtttttgagtttgccgagttctttgatggccatgttttcgttaat
gagaagggtgctcagtataaggctgtagttgaatatgcaccttcacagcgtgttccaaga
tcatctaccaagaaggatggtcgtgaggggacaatatacaaagatccagattatttggag
tttctcaaacttattgcaaagcctgccgagcatcttccaagtgctgaaatacaattggaa
aggaaagaagcagagcaatctggtgctgcaaaagaaactccaattgttacccctctcatg
gagtttgtacgccagaaacgagcagttgaaagcggaacacagggatcttcagtacctcgg
aaggttaaaaggggtggggcagcatcatctagaaagcctgagtcgaattccatgaagcga
gggatggagaaaaagaagtatatcttaaaggacagtgtaaagaacacaaaccgcagagac
aagtcaaatttcattttggtgcccaggcgagaggatcagtcggctacttcaagtgcaatt
ggaatttcagatgttggtacagctgactttggaaagaaaaaaattctgcttctcaaggga
aaggagcgagatatatctcatttgcagagtgctacatcttctgggaattctcctgcaagt
gcatcaaaacataatcataggcgtgaggctggtggaggcgtgatcagaagcattctttta
aataatgaagcacgtcatggacagagttcatcagtagctcagtctcatcaaaagattcag
atcctgaactcggacaacgggaagcgtccacctcgtcccactaatgctcgatctgggtct
aatgatatctccagtaatgaaccaaatccatctggttcagaaggggatggaaaaagggct
tcagacaataagtttagtaaaaaggaacttcatggcctgggtagtgctagtgagaagcaa
gagaaacgaataagaaacaaagatagacctgatcgtggagtctgggcaccacgcagtcgt
tcagatgcctcagtctcacaacttgaggaatcctctgttccacaatctagtcatttgctt
tctgactcagttgaagcattccgtggggaaatgaaagaagatattcatggaagcaggact
ggggatgttacaaccattgtgagtgggcgtaacagttcggtggaaaatggttctgttaga
catgttggacgtcgtggggctggccatgttatgaaggatgatgggtctttgaacccaaat
gaagggaagccatccaaaagaggtgttgctggtggtcatgagaaacaagtatgggttcag
aagtcatcttcaggttcttag
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