Cucumis sativus (cucumber): 101212151
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Entry
101212151 CDS
T02486
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03022
Basal transcription factors
csv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
101212151
09124 Replication and repair
03420 Nucleotide excision repair
101212151
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csv03021
]
101212151
03400 DNA repair and recombination proteins [BR:
csv03400
]
101212151
Transcription machinery [BR:
csv03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
101212151
DNA repair and recombination proteins [BR:
csv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
101212151
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
IBR
Tfb4
Motif
Other DBs
NCBI-GeneID:
101212151
NCBI-ProteinID:
XP_004143721
UniProt:
A0A0A0KPM4
LinkDB
All DBs
Position
5:complement(3435959..3444361)
Genome browser
AA seq
423 aa
AA seq
DB search
MNNGENRRLNGEADEEDDDDDANGLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYHA
QYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVDAFVREF
FDQNPLSQIGLVTIKDGFANCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYLN
QIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGG
SYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGG
GYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLP
KVCFGCQESLMNPSTGNSPSIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKLAT
SDE
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgaacaatggggaaaataggcgattgaatggggaagccgatgaagaagatgatgatgat
gatgccaatggacttgctgcatgggaaaggacttatgcggatgataggtcgtgggaagcc
ctgcaagaggatgagtctggactccttcgtccgatcgacaataaagcaatttaccatgcc
cagtatcgaaggcgccttcgaaccctttcttccttagcaaccactgctcggattcagaag
ggtcttattcgctatctctatattgtcattgacttctccaaggctgctacagaaatggat
ttccgaccaagtcgaatggctgtggtggcaaaacatgtagacgcttttgtaagggaattc
tttgaccaaaatccactcagccagattggtttggtgactataaaagatggttttgctaat
tgcttaacagatcttggtggaagtcctgaatctcatgttaaagcgttaatgggtaaactg
gaatgctcaggtgatgcttccttgcagaatggtctggaacttgtccacagctatctaaat
caaattccatcatatgggcaccgagaagttttagtcttatactctgctcttaattcttgc
gatcctggggacatcatggagacagttcagaaatgcaaaacttctaaaataaggtgttca
gttattggtcttactgcagaaatttttatttgcagacatctctgccaagaaactggtggc
tcgtactctgtcgcattggatgagtctcactttaaagagttgctattggagcatgcaccc
ccacccccagcgattgcagactctgccatgcctaatttaatcaagatgggttttccacaa
agagcagcagagagttccattgcaatatgttcatgccacaaggaagctaaagttggaggg
ggctatacttgccctcgatgcaaagcacgggtttgtgagcttcccacagagtgtcgaatt
tgtggactgacgcttatctcctctccccatttggctaggtcgtatcatcatctttttcca
attataccatttgatgaagtctctgataaagtatttcatgacccacgacaccaacttcca
aaagtttgctttggctgccaagaaagcctcatgaatcctagcacaggtaacagtccaagc
atacgtgtttcttgcccaaagtgcaaacaacacttctgtcttgattgtgatatttatatt
cacgagagcttgcacaattgtcctggctgtgagagtttcaggcgtcccaaattagcgact
tctgacgaatga
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