Cucumis sativus (cucumber): 101216402
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Entry
101216402 CDS
T02486
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03013
Nucleocytoplasmic transport
csv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101216402
09122 Translation
03013 Nucleocytoplasmic transport
101216402
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csv03019
]
101216402
03041 Spliceosome [BR:
csv03041
]
101216402
Messenger RNA biogenesis [BR:
csv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
101216402
Spliceosome [BR:
csv03041
]
Complex C
Other components
EJC/TREX
101216402
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
101216402
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
CarD_C
Motif
Other DBs
NCBI-GeneID:
101216402
NCBI-ProteinID:
XP_011655214
LinkDB
All DBs
Position
5:complement(18185476..18211534)
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AA seq
658 aa
AA seq
DB search
MDLSLYLEEFRKAILQMGPPENFALQIVQDVIRPQKHTKLAQDENQLLENILRRLLQELV
SSAVQSTEPVMQYGMSIDEKETSQGHIPRLLDIVLYLCEKEHVEGGMIFQLLEDLTEMST
LRNCKDIFGYIESKQDILGKQELFARGKLVMLRTCNQLLRRLSKASDVVFCGRILMFLAH
FFPLSERSAVNIKGVFNTSNETKYEKQPPDGFSIDFNFYKTFWSLQEFFCNPASLALAST
KWQKFTSSLMVVLNTFDAQPLSDEEGDANILEEESATFSIKYLTSSKLMGLELKDPSFRR
HVLMQCLILFDYLKAPGKNEKDIPSETMREEIKSCEERVKKLLEVTPPRGKDFLQKIEHI
LQRENNWVWWKRDGCAPFEKQPIEKKTINDVTKKRRPRWRLGNKELSQLWKWSDQNPNAL
TDPQRVRSPAISDYWKPLAEDMDESAGIEAEYHHRNNRVYCWKGLRFSARQDLEGFSRFT
DHGIEGVVPLELLPPDVRAKYQAKPNERSKRAKKEEAKGAVQQVDENQMATPASENDGEG
TRSDPDGPSAGMDVDTAIATGNVSQGGISTPEENKLSSDTDIGQEAGQLEADAEVEPGMI
DGETDAEVDLDTAGFFVLEPNNMRGDFRLFAQGNIIYYSLKFSLPHCCTHFYICFSAK
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atggatctatcactttacttggaagagttccgaaaggccatactgcaaatggggccacca
gaaaattttgctctgcagatagttcaagatgttattagacctcagaagcacacaaaattg
gcacaagatgaaaatcagttgctggaaaatattctacggcgactacttcaagaattagtg
tcatctgccgttcaatcaacagagccagtaatgcagtatgggatgtctattgatgaaaag
gaaacttcacagggtcatattccacgtcttcttgacattgtcctatatctttgtgagaaa
gagcatgttgaaggaggcatgatattccaactgttggaggacctgactgaaatgtcaaca
ttgaggaactgcaaagatatttttggttacattgagagtaaacaagacatattgggaaag
caagagctttttgctcgcggaaaacttgtcatgttgagaacgtgcaatcaattgctccgt
cgtctatcaaaggcaagtgatgtggtgttttgtggacgcattctgatgtttctagcacat
tttttccctctatctgaacgctccgctgtgaatataaaaggagtgtttaacacctccaat
gaaacaaaatatgagaaacaaccccctgatggcttttctattgatttcaacttttacaag
accttttggagtttacaggaattcttttgtaatcctgcctcccttgcactagcttcgacg
aagtggcaaaagttcacatctagtttaatggtcgtattgaatacctttgatgcacaacct
ttgtctgatgaagagggagatgctaacatcttggaggaagagtcagcaaccttcagcata
aaatatcttactagtagtaaactgatgggtttagaattgaaggacccaagttttcggcgt
cacgttcttatgcagtgccttatattgtttgattatctaaaggccccaggaaaaaatgag
aaagatattccatctgaaaccatgagagaggaaattaaatcttgtgaagagcgtgtgaag
aagttgcttgaggtgacaccgcccagagggaaagacttccttcagaagattgagcatata
ttacaacgggaaaataattgggtatggtggaaacgtgatggttgcgctccttttgaaaag
caaccaattgaaaagaaaaccatcaatgatgtaactaaaaaacgtaggccaagatggaga
ctggggaataaagaactttctcaattgtggaaatggtctgatcagaatccgaatgctttg
actgatcctcaacgtgttcgtagtcctgcaatctctgattattggaaacccttggcagaa
gatatggatgagtctgctgggattgaagctgaatatcatcatagaaataaccgagtttat
tgctggaaaggccttcggttttcagctcggcaggatttagaaggattttctcggttcacc
gaccatggcattgaaggtgttgtgccgttggaactcctgccacctgatgtacgagccaaa
taccaagccaaaccaaatgagagatctaaacgtgctaaaaaggaagaagcaaaaggggca
gtccagcaagttgatgaaaatcagatggcaactccagccagtgagaacgatggcgaagga
accagaagtgatcccgatgggccatcagcagggatggatgtcgatacagctattgccacg
ggcaatgtatctcaaggtggtatttcaactccagaagaaaataaactaagctctgacacg
gatattggtcaagaggcaggccagttggaagccgatgctgaggtggagccgggcatgatt
gatggcgagacagatgcagaggttgatttggatactgcaggtttctttgttcttgagcca
aacaatatgaggggagatttcaggctttttgcacaaggcaacataatctattacagtttg
aagttttcattaccccactgctgtacccatttttacatatgtttctcagcaaaatga
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