Cucumis sativus (cucumber): 101222147
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Entry
101222147 CDS
T02486
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101222147
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csv03041
]
101222147
Enzymes [BR:
csv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101222147
Spliceosome [BR:
csv03041
]
Complex A
U2 snRNP components
U2 related factors
101222147
Complex B
101222147
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
FeoA
IFP_35_N
Motif
Other DBs
NCBI-GeneID:
101222147
NCBI-ProteinID:
XP_011649205
UniProt:
A0A0A0LPZ3
LinkDB
All DBs
Position
1:complement(2773907..2781293)
Genome browser
AA seq
1118 aa
AA seq
DB search
MEEGRSKSRRDDLDEPKKSHRERDRERDKERNGDRGRDKEKRDRERSYDSEELVQHEREK
EKPRRDKDKTRNRDDERDRGRDRRKERDRAREKTRDKEKRERAREKERDKRDRDRDRERR
ERERDREKERDKDRRKRREVVSEYSDEDSTEHGRKRRRRDDDDHRAHESNSRINKQRDHV
DESPREKSEEDAFDKNETKPTREEELENEQKRLDEEMEKRRRRVQEWQKSRRLKEEADGD
KQGELNADEPKSGKTWTLEGESDDEYENARPTETDMDVDENSKPLVDGEQIAVNFNNGNE
AAASPPQDSIGGDAADDEIDPLDAFMNSMVLPEVEKLNKVEVPTVNDDKIVELKSRDKPS
DQSGGKAQRRISNKSMGRIIPGEDSDTDYGDLENDGDTLEDEDDDEFMKRVKKTKAEKLS
IVDHSKMDYQPFRKNFYIEVKEISRMTLEEVAAYRKQLELKIHGKDVPKPVKTWHQTGLT
SKILETIKKLNYEKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQSPV
VPGDGPIGLIMAPTRELVQQIHSDIKKFSKVMGLRCVPVYGGSGVAQQISELKRGAEIVV
CTPGRMIDILCTSAGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS
ATFPRQVEILARKVLNKPVEVQVGGRSVVNKDIAQLVEVRPENERFLRLLELLGEWYEKG
KILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAA
RGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFIAEEDSRYAPDLVKALEL
SEQVVPDDLRALADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGF
EEDKSDSEDEDDGVRKAGGDISQQAALAQIAAIAAATKVSAVSITTPSSAAQLLPNGGLP
VSLPGVLGLTIPGTMPVIPSATLPTVTNDGAAARAALAAAMNLQHNLAKIQASAIPEHYE
AELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQFFPPGKIAGPGERKLYLFIEGP
TEQSVKRAKAELKRVLEDITNQTLSLPGGSQPGRYSVV
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagggagaagtaaatctagaagagacgatttggatgaaccaaagaagagtcat
cgtgaacgcgacagggaaagggataaagagagaaacggagatagaggcagggacaaggag
aagagagatcgggaaaggagttatgattctgaagagctggtgcaacacgagagggaaaag
gaaaaacctaggagggataaggataaaacacggaatcgggatgatgaaagagatagagga
agggataggaggaaggagagggacagggcgagggagaaaaccagggacaaggagaagagg
gaaagggcaagagagaaagaaagagataagagggatagagacagagacagggagaggaga
gaacgtgagagagatagggaaaaagaaagagacaaagatagaaggaagcggcgggaagtt
gttagcgaatatagtgatgaagattctactgaacatggtaggaagcggcgtaggagagat
gacgacgaccatagagctcacgaaagtaatagcaggataaacaagcagagagatcacgtt
gacgagagtccacgagaaaagagtgaagaagatgcatttgataagaatgaaacaaaacca
actcgtgaagaggagttggaaaatgaacaaaagaggttggatgaagaaatggaaaaacga
aggcgaagagttcaggagtggcagaagtcaaggagattgaaagaagaagctgatggagat
aagcagggtgaactgaatgctgatgaaccaaaatctggcaagacatggacccttgaaggt
gaatctgatgatgagtatgaaaatgccaggcccactgagacggatatggatgtggatgaa
aattctaagccacttgtagatggtgaacagattgcagtgaacttcaacaatggcaatgaa
gcagctgcatctccaccgcaagatagcattggtggtgatgcagctgatgatgaaattgat
cctctggatgctttcatgaactccatggttctgcctgaagtggagaagctaaacaaagtt
gaggtccccacagttaatgatgataaaattgtagagttgaagagcagagataaaccaagc
gatcagagtggtggtaaggctcaaagaagaatttcaaataaatcaatgggcagaataatt
cctggtgaagattctgacacagactatggagatcttgagaacgatggagatactttagaa
gatgaagacgacgacgagttcatgaaaagggtgaagaagacaaaggctgagaagctctct
attgttgaccattcaaagatggactatcagcctttccgtaagaacttctatatcgaagtg
aaggagatatcaaggatgactttggaagaagttgctgcttatcggaagcaattggaattg
aagatacatggaaaagatgttccgaagcctgttaaaacctggcatcaaactggacttaca
agtaaaatcttagaaacaatcaagaaacttaactatgagaagccaatgccaatacaagct
caggcattgccaatagtcatgagtggccgagattgcatcggtattgccaaaactggatct
ggaaaaacgcttgcatttgtgcttccaatgctgaggcatatcaaggatcaatcacctgtt
gtacctggtgatggtcctattgggcttataatggctcctaccagagagttggtccagcag
atacacagtgacataaaaaaattttcaaaggtaatgggtctaaggtgtgtgcctgtatat
ggaggttccggtgttgcccaacaaattagtgagcttaagcgtggagctgaaatagtagtt
tgtactccaggaaggatgattgatatactctgcaccagtgccgggaaaataacaaatctg
cgtagagttacatatttagtcatggatgaagctgataggatgtttgacatgggttttgaa
cctcagattactcgaattgtgcagaatattcgaccagaccgtcaaactgtactattttct
gctacttttcctcgtcaagttgaaattttggctcgtaaagtgttaaacaaacctgttgag
gtacaggttggtgggaggagtgttgtgaataaggacatagcacagttagttgaagtgagg
cccgaaaatgagaggtttttgagactgttagaactgttgggagaatggtacgagaaaggc
aagattctaatttttgtccactcacaggagaaatgtgatgctctctttagggatctcctg
aagcatggttacccttgcctctcactccatggagcaaaggatcagactgatcgtgagtct
accatatcagatttcaaaagcaatgtgtgcaacttgttaattgcaactagtattgctgcc
aggggtttagatgtcaaggagctggagctagtgatcaattttgatgtaccaaaccactat
gaagattatgtgcatcgtgtgggtcgcacaggccgagccggtcgtaaagggtgcgccatc
acatttattgctgaggaagattcaagatatgcaccagatctggtgaaagcattggaactc
tccgagcaggttgttcctgatgacctgagagctcttgctgatagtttcatggcgaaggtg
aatcaaggactagagcaggcccatggaactggctatggtggcagtggtttcaaatttaac
gaggaagaagatgaagtgaggagggcagcaaagaaagcccaagctaaagaatatggtttt
gaggaggacaaatcagattcagaagatgaagacgatggtgtccggaaggcgggtggtgat
atctcacagcaggcagctttggcccagatagctgctatagcagctgccactaaagtcagt
gcagtttcaatcacaactcccagctctgctgctcagctacttccaaatgggggattacct
gtttctctgcccggtgttcttgggctcacaattccaggaacaatgccagttattcctagt
gcaacattgcctacagttactaatgatggggctgctgcaagggcagcactagcagctgca
atgaacttgcaacacaacctagccaagattcaagctagtgcaatacctgaacactatgaa
gctgaattggaaattaacgatttcccacagaatgctcgatggaaggtaacccataaggag
accttaggcccaatttcagagtggactggagctgctattactactaggggacagttcttt
ccaccaggcaagattgctggacctggagagcgcaagctttacttgttcattgaaggtcct
actgaacaatctgttaagagagctaaagctgagttaaaacgtgtccttgaggacattaca
aaccaaacactgtcactacccggtggatcacaaccaggcagatactcggtcgtttaa
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