Clostridium tagluense: LL095_21375
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Entry
LL095_21375 CDS
T08715
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ctag
Clostridium tagluense
Pathway
ctag03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ctag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LL095_21375 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ctag03400
]
LL095_21375 (mfd)
Enzymes [BR:
ctag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LL095_21375 (mfd)
DNA repair and recombination proteins [BR:
ctag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LL095_21375 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
AAA_22
RecG_dom3_C
MFD_D3
YjdM
Motif
Other DBs
NCBI-ProteinID:
WAG50367
LinkDB
All DBs
Position
complement(4629823..4633350)
Genome browser
AA seq
1175 aa
AA seq
DB search
MRLSGLMKPLKDSVQFKNIRTNMENENYPIGLYGLSESAKNYLVNGVYEQLDKSLLILTH
SDVEAKNIYDDLSFYVNDVYYFPTREVGFYNADAVSGDLRWERLKVMKKIMQKGKKIVIT
CIEALAATYIPIDLLQKYIFGLSVGSTLNLKDFTEKLIQCGYERVDRVDTKGQFSIRGGI
IDLYPPISALPFRIELFDDEIDSIRTFNCETQRSIDKVSEIDIFPAKEIILTQESMESGY
NGIKEDLGNVLASFNKKKDKEAIERITSLVNINLESLKETWKFEAIDSYMPYFYDTTSTF
LDYMKDSFIVVDDAQRCMGKLDSVYFEFQENYENFLKRGNILPNQAGILINKEDIYEDLD
TREVMTINAIAKSTKVLSPKSIVSFSQITINDYHGQLDILIEDIKDKKVKGYKIVILSGT
RTRGERLIDILRDRGIESVYKDSISEIQFGQVVITFGNQLKGFEYPELKLCVISDKEVFG
GAKRKATSRSSKKGVSKIKSFTELKLGDYVVHVNHGIGVYKGIKQLEVHGHKRDYLELGY
NSGDALYVPVEQLDLVQKYIGSEGKAPKISKLGGVEWIKAKNKVKNSIADIAEDLVKLYA
SRATLKGYRYSEDTVWQKQFEEEFPFEETPDQLIAIEEIKKDMESDKPMDRLICGDVGYG
KTEVAVRAAFKAVMDGKQVAFLVPTTILAEQHYKNLTKRFSDFPVKIEMVSRFRSPAQQK
VVLKATKEGNVDILIGTHRIIQQDVKFKDLGVLIIDEEQRFGVTHKEKIKSISKNIDVIT
LTATPIPRTLHMSLTGVRDISVIETPPEERYPIQTYVVEFNDQLIRDAILREVNRNGQVF
FVYNRVETIKDMAAYIGKLVPEARLGIAHGQMTERELETVMLDFMENKYDILMCTTIIET
GIDIQNTNTIIIYEADKMGLSQLYQLRGRVGRSNRIAYAYFTYKKDKVLTEVAEKRLKAI
KDFTELGSGFKIAMRDLEIRGAGNMMGAAQHGHMAAVGYDLYCRMLEETVKKIRGDVEAE
PIETSVEIKIDAFIPSKYIEDESQKIEIYKKIAAIDSHEDMLDIQEEIEDRFSDIPSSVA
NLMDIAYLRSISKQVGIIEIKEVKEEIVLQFDSSERINAGLVKALVSKYNRSIIFKLGTK
PVFAYKYKDLKKEEILSNLIEIVKYIKSIAEIKLK
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgagactgagtgggcttatgaagcctttgaaagatagtgttcaatttaaaaatatacga
acaaatatggaaaatgaaaattacccaattggactatatgggctttcagaatcagctaag
aactatttagtgaatggcgtgtatgagcaattagataaatccctattaattttaacacat
agtgatgtagaagctaaaaatatttacgatgacttatctttttatgtaaatgatgtctat
tattttccaaccagagaagtgggcttttataatgcagatgctgtatcaggggatcttcgg
tgggaaagacttaaagtaatgaaaaagattatgcaaaagggtaaaaaaatagtaattact
tgtattgaagcattggcagctacatatatacctatagatttattgcaaaaatatattttt
ggattgtctgtaggaagcacattaaatttgaaggattttacagaaaaattaattcagtgt
gggtatgagagagtagatagagttgatactaaaggtcaattttctataaggggggggata
atagatttatatcctcctatatcagcgctaccttttagaatagagctctttgatgatgaa
atagattccataaggactttcaattgtgaaactcagaggagtattgataaggtatccgaa
atagatatatttccagccaaggaaataatattgacgcaggaaagcatggaaagtggatac
aatggaataaaggaagatttagggaatgtactagctagctttaataaaaaaaaagacaag
gaagctatagaaagaataacttcactagttaatattaacttagaatcacttaaagaaact
tggaaatttgaagccattgacagctatatgccttatttttatgatactacatctactttt
ttagattatatgaaggattcatttatagtagtggatgatgcacaaaggtgcatgggaaaa
ttagatagcgtttattttgaattccaggaaaattatgaaaattttttgaaacgaggaaat
atactgccaaatcaagcagggattttaattaataaggaagatatatacgaggatttagat
actagggaagttatgacaataaacgctatagctaaaagcacaaaagttctgagtccaaag
tccatagtatctttttcacaaattacaattaatgattatcatggacaattagatatactt
attgaagatataaaagataaaaaggttaaaggctacaaaattgtaattctttctggtaca
agaactagaggggaaagattaatagatatcctaagggataggggaattgaaagcgtttat
aaagacagtatttcagaaattcagtttggccaggtggttataacctttggtaaccagcta
aaaggttttgaatacccagaattaaaactatgcgttatctcagataaagaggtttttggt
ggagcgaaaagaaaagctactagtcgttccagtaaaaagggagtaagtaaaattaaaagt
tttacagaacttaaattgggtgattatgttgttcacgtaaatcatggtataggagtatac
aaaggaattaagcaattagaggttcatggtcataaaagagattatttagaacttggatat
aattctggcgatgccctctatgttccagtagagcaattagatttagtacaaaaatatatt
ggaagtgaaggcaaagcaccaaagattagcaaactcggtggagtagaatggattaaggct
aaaaataaggtcaagaactctattgcggatattgcagaggatttggtaaagctttatgca
tcaagggctacacttaagggctatagatatagcgaggatactgtatggcaaaaacaattt
gaagaagaattcccatttgaagaaacaccagatcaattaattgcaattgaagagattaag
aaagatatggaatccgataaacctatggacagattgatatgtggcgacgttggatatggc
aaaacagaagtagctgttagagctgcttttaaagcagttatggatggtaaacaagtagca
ttcttagtacccactactatactagctgagcaacattataaaaatcttaccaaaagattc
tcggattttccggtaaaaattgaaatggtaagtagatttagaagcccagcccagcagaaa
gttgtgcttaaggctacaaaagaaggaaatgtagatatattaataggaactcacagaata
attcagcaagatgtaaaatttaaagatttaggggtattaattatagatgaagaacaacgg
tttggggtaactcacaaggagaaaataaagagtataagcaagaatatagatgtaattacg
ctaacagccactccaattccaagaacgttacatatgtctcttactggtgtgagagatata
agtgtaattgaaaccccaccagaagaaagatatccaatacaaacttatgtagtggagttc
aatgaccaactaataagggatgcaatactcagagaagtaaatagaaatggtcaagttttt
tttgtgtacaatagagtagaaactataaaggatatggcagcatacataggtaagctcgtg
ccagaagcaaggctcggcattgctcatgggcaaatgacagaaagagaattagaaactgtc
atgttggattttatggagaataagtatgatatattaatgtgtactacaattatagagacc
ggaatagatatccagaatacaaatacaataataatatacgaagcagataagatggggctt
tctcagctttatcaattgaggggtagagtagggcgttcaaatagaatagcctatgcatat
tttacctataaaaaagataaggtgttaacagaggtagctgaaaaaaggttaaaagcaatt
aaagattttacagagctggggtcaggttttaaaattgccatgagggatcttgaaattagg
ggcgctggaaatatgatgggcgcggctcaacatggtcatatggctgcggtagggtacgat
ttatattgtaggatgttagaggagacagttaaaaaaataagaggtgatgtggaagcggaa
cctattgaaacttctgttgaaatcaaaatagatgcatttattcctagtaagtacattgag
gatgagtcgcagaaaattgaaatctataaaaaaattgcagctattgattcccatgaggat
atgttagatatacaagaagaaatagaagataggttttcggatataccatcatcagttgca
aaccttatggacattgcctatcttaggagtatatctaaacaggtgggaataatagaaatt
aaagaggtaaaggaggagatagtactacaatttgatagtagtgaaagaataaatgcagga
ttagtgaaagcattggttagtaaatataataggagtattatttttaaactaggaactaaa
ccagtctttgcatataaatacaaagatttaaaaaaggaagaaatactttcaaatctcata
gagattgtgaagtatataaaaagtatcgcagaaataaagttgaaataa
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