Chryseobacterium taklimakanense: 4412677_00744
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Entry
4412677_00744 CDS
T05512
Name
(GenBank) Putative DNA ligase-like protein Rv0938/MT0965
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ctak
Chryseobacterium taklimakanense
Pathway
ctak03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ctak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
4412677_00744
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ctak03400
]
4412677_00744
Enzymes [BR:
ctak01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
4412677_00744
DNA repair and recombination proteins [BR:
ctak03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
4412677_00744
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
mRNA_cap_enzyme
DNA_primase_S
Alpha_TIF
Motif
Other DBs
NCBI-ProteinID:
SNV38093
UniProt:
A0A239WVV8
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All DBs
Position
1:747062..749602
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AA seq
846 aa
AA seq
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MSLKEYNEKRDFKQTAEPEGIAETSGEKLRFVVQRHAASHLHYDFRLEMDGVLKSWAVPK
GPSLNPKDKRLAMHVEDHPFSYRTFEGTIPKGNYGAGEVEIWDEGWYEPLNKIKGKTDDM
VMRAELHRESLKFIMHGKKLQGEFALVKIKNSADGKSWLLIKHKDEFATEFYDAEEHTAK
NSKVTAALHKKDGEKVSESTGKTYRNYAPALSKEKKLKQFIEPMLAKNSDNKPFDGKDWA
FEIKWDGYRAVADLRDGIQLYSRNGLDFSGKFKKIVNQLGLQEHEMVLDGEVVAYDDKGK
PNFQWLQNIGERPNVNLIYQVFDILFLNGHSTRSLSFLERKELLKGALKETENIKYCDHI
LEKGKEFFRLAEDMGLEGIIAKKTESTYTDGIRSSEWIKVKTQQTDEVIICGYTEPKGAR
KNFGSLILGQFQDGELTFSGHIGTGFSDKTLKELFELMKPLVTDQSPFKKIPKTNEKPTW
LKPELIAEIKYSEKTKDGIFRHPVFLHLREDKVVEDVKSDEQIPEETMEKETPKAVKKEP
AARENESKTKIGKQEVKLTNQNKIYFPKDGVTKGDVVAYYQSVAEFILPHLKNRAQSLNR
FPNGIDGMSFYQKDAADETPDWIETHKIYSDSNDKYINYIICNDAATLAYLNNLGCIEMN
VWTSRIDDIENPDYLVLDLDPSDNNTFDDVIVTANEVKKILDKAKIEGYPKTSGSSGIHV
YIPMGSEYSFEQVKNFGHVLMQQVQQNLPDITTLERSLQKRDKNKIYLDYLQNRRGQTLA
SVYSLRPKNGAPVSMALEWKEVKSGLKPTDWNIENALARIEKKGDLFLPTLNKGIDMLKA
IENLQK
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atgtcactaaaagaatacaacgaaaagcgtgatttcaagcagactgcagaacccgaaggc
attgccgagacttctggcgagaaactccgttttgtggttcagcggcatgcggcgtcgcat
ctgcattacgacttccggctggaaatggacggggtgctgaaaagttgggccgttccaaaa
ggcccgtcattaaaccccaaagacaaacgccttgcaatgcatgtggaagatcatcctttt
tcttaccgcactttcgagggaacaataccgaaaggaaattacggcgccggtgaagtagaa
atttgggatgaaggctggtatgaacctttaaacaaaataaaaggcaaaaccgatgacatg
gtcatgcgcgccgaactgcacagggaaagcctgaaattcatcatgcacggcaaaaaactg
cagggcgaatttgctctggtaaaaattaaaaactctgccgacggtaaatcctggctgctc
atcaaacataaagacgaatttgcgaccgagttttacgatgctgaagaacacaccgccaaa
aactcaaaagttactgcagcactccataaaaaagacggagaaaaggtttctgaaagcact
ggaaaaacttaccggaactacgcccctgctctttctaaagaaaagaagctgaagcaattc
atcgagcctatgctggcaaaaaattcggacaataaaccttttgacggcaaggactgggct
tttgaaataaaatgggacggttaccgcgcggttgcagatctgcgcgacggaatacagttg
tactcgaggaacggactggatttttctggaaaattcaaaaaaattgttaaccagttgggt
ttgcaggagcacgaaatggtcttagacggcgaagttgtagcgtatgatgacaaaggaaaa
ccgaatttccagtggctgcagaatattggtgagcggccaaatgtgaacctgatttaccag
gtctttgatattttatttttaaatggccactccaccagaagtttaagcttcctcgaacgg
aaagaacttcttaaaggcgcactgaaagaaacggagaatatcaaatactgcgaccacatc
ctcgaaaaaggaaaagagtttttccggcttgccgaagatatgggtttggaaggcatcata
gccaaaaaaacggaaagcacatacaccgacggcatccgaagttcggaatggattaaggtg
aaaacgcagcaaaccgatgaagtcatcatttgtggatacactgaaccgaaaggcgccaga
aaaaactttggctccctgattctcggacagtttcaggatggtgaacttaccttttccggc
cacatcggaaccggattttcagataaaaccttaaaggaactttttgaactgatgaagcct
ttggtaacagatcaatcacctttcaaaaaaatcccgaaaaccaacgaaaaaccaacctgg
cttaaacctgaacttatcgccgaaatcaaatattctgaaaagactaaagacggcattttc
agacatcctgttttcctgcatttaagggaagacaaagtggttgaagatgtgaaaagtgac
gaacaaatccccgaggagaccatggaaaaggagacaccaaaagccgtaaaaaaagaacct
gcagcaagagagaacgaatctaaaacaaaaattggcaaacaggaagtaaaactgaccaac
caaaacaaaatttatttcccgaaagacggtgttaccaaaggtgatgtggtggcatattac
caaagcgtggcagaattcattttacctcaccttaaaaaccgagcacagtctttaaatcgt
ttcccgaacggtattgacggaatgagtttctaccagaaagacgccgccgatgaaactccc
gactggattgaaacccacaaaatatattccgacagcaatgataaatacatcaattatatc
atctgtaacgatgctgccaccctcgcctacctcaacaatttgggctgcattgaaatgaat
gtctggacgagcagaattgatgatatcgaaaatccggattacctcgttctagacctcgat
ccctctgacaataatacttttgacgacgtcatcgtgaccgcaaacgaagtaaaaaagatt
ttagataaagcaaaaatagaagggtacccgaaaacttccggaagttcgggcatccatgtt
tatattccaatgggcagcgaatattcttttgaacaggttaaaaattttggccacgtcctg
atgcagcaggttcagcaaaaccttcctgatatcacaaccctggaaagaagccttcagaaa
agggacaagaataagatctaccttgattatctgcaaaaccgccgcggacaaacattggcg
agtgtttacagtttaaggccgaagaacggtgcgcccgtttcaatggctttggaatggaaa
gaagtgaaatccggacttaaacccaccgattggaacatcgaaaatgctttggcgagaatc
gagaaaaaaggcgacctgtttcttccgaccttaaataaaggaatagacatgctgaaggcc
attgaaaaccttcagaaatag
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