Clostridium tetani E88: CTC_00194
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Entry
CTC_00194 CDS
T00112
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ctc
Clostridium tetani E88
Pathway
ctc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ctc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CTC_00194
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ctc03400
]
CTC_00194
Enzymes [BR:
ctc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CTC_00194
DNA repair and recombination proteins [BR:
ctc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CTC_00194
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AAO34843
UniProt:
Q899I3
LinkDB
All DBs
Position
149078..152170
Genome browser
AA seq
1030 aa
AA seq
DB search
MNFIMRLNGILKPLKDSKEFKDIKDNIKSEEYPINIIGLEDSSKSYLIKGVYDEIDKPLL
ILTHSDIEAKNIYEDLFFYEANVHYFPSKEVVFYNVDAISGDLRWERLKIIKHILEPGKK
IIVTSIESIAPICIPLNLYKEYFFKFSIGDVVDYKDLSEKLLKSGYDRVDLVYNKAQFSI
RGGILDIFPPTSSEPYRIEFFDNEIDSIRNFNTESQRSIEKVDCIEVFPAKEIILNKENI
DSACEKIMMDLKKVRNNLDSLNNKESFDKLKNTIDKNIESLKETWGFETIDSYLPYLYDT
TTSFLNYFKDCFVVVDDIQRCQGKLDSVYYEYYDSYDSFLKRGDILPRQGELLIPKEDIW
EALEESKVMTLSVLPKKTDVLKERQTVNFKEITSQNYQGQIDLLIEDIEKRKEEKYKIVI
LAGTRARGERLVDTLRDRGIDSVYRDVIDKILPGEVVITFGSQIKGYEYPDFKLCIISDK
EVFGEAKRRKNKKLTNKKGFSRIKSFTDLKPGDYIVHVNHGIGVYKGIKQLEVGGHRKDY
LELTYYGDDKLYVPVEQLDIVQKYIGGEGKTPKINKLGNAEWTKTKNKAKKSIEEIAEDL
VNLYAVRSTLKGYKFSKDTVWQRQFEEEFPHEETPDQITAIEEIKNDMQSNRTMDRLLCG
DVGYGKTEVALRAAFKSVMDGKQVAFLVPTTILAQQHYNNLLKRFSDFPINIEMVSRFRT
SAQQNATMKALKEGNIDILIGTHRILQKDVQFKDLGLLVIDEEQRFGVKHKEKIKEFKKN
VDVLTLTATPIPRTLHMSLVGVRDISIIETPPEDRYPIQTYVVEYNDQLIRDAILRELNR
GGQIYFVYNRVENIKEIATHVSKLVPEAKVGIAHGQMKERELEKVVMDFMNKEHDILVAT
TIIETGMDIQNVNTMIIYDSDKMGLSQLYQLRGRVGRSSRMAYCYLTYKKDKILTEVAEK
RLKAIKEFTELGSGFKIALKDLEIRGAGNMMGSSQHGHMASIGYDLYCKMLEDTIKEKKG
ERKREPINIV
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
gtgaattttattatgagattaaatggtattctaaagccattaaaagatagtaaggaattt
aaagatataaaagataatataaaaagtgaagaatatcccataaatataatagggcttgaa
gactcttcgaagagctacttaattaagggagtgtatgatgaaatagacaagcctttgtta
atacttactcatagcgatatagaagcaaaaaatatttatgaagatttattcttttatgaa
gcaaatgtacattactttcccagcaaagaagtggtcttttataatgtagatgctatttct
ggagatttaagatgggaaaggttaaaaataataaaacatatattagaaccgggtaaaaaa
attatagttacgtctatagaatcaatagcgccgatatgtataccattaaatctatataaa
gagtatttttttaaattctctataggggatgtagtggactataaagacctaagtgagaaa
cttttaaaatcaggatatgatagagtggatttagtatacaataaagctcaattttctata
agaggtgggatattagatatatttccaccaacatcatcagaaccttatagaatagaattt
tttgataatgaaatagattctataaggaattttaatactgaatctcaaagaagtatagaa
aaagtagattgtatagaagtatttccagctaaggagattatattaaataaagaaaatata
gattctgcttgtgaaaaaattatgatggatttgaaaaaagttcgaaataacttagattct
ttaaataataaagaatcttttgataagttgaagaataccattgataaaaatatagaaagt
ttaaaggaaacatggggttttgaaactatagatagttatttgccatatttatatgatact
actacatcttttttaaattattttaaggattgctttgtggtggtagatgatatacagaga
tgtcaaggtaaactagatagtgtatattatgaatattatgatagctatgatagttttctt
aaaagaggagacatacttccaaggcaaggagagttattaataccaaaagaagatatatgg
gaagcattagaagaaagtaaagttatgactttaagtgtattacctaaaaaaacagatgtt
ttaaaggaaagacaaactgttaattttaaggaaattacatcgcaaaattatcaaggacaa
attgatttgcttatagaagatattgaaaaaagaaaagaggaaaaatataagatagtaatt
cttgctggtactagagccaggggagaaagacttgtagatactttaagagatagaggaata
gatagtgtttatagggatgtaatagacaaaattttgccaggagaagtagttataaccttt
ggaagtcaaataaaaggttatgaatatccagattttaaattatgtattatatcggacaaa
gaggtatttggagaagcaaaaagaagaaagaataaaaagcttactaataaaaaaggattt
agtagaataaagagttttacagatttaaagcctggagattatatagttcatgtaaatcat
ggaataggagtatataaaggaattaagcaattagaagttggagggcatagaaaagattat
ttagaactaacatactatggcgatgacaagctttatgtaccagtggaacaattagatata
gtacaaaaatatatagggggagagggaaaaactcctaaaataaataagctaggcaatgct
gaatggacaaaaaccaagaataaagctaagaagtctatagaggaaatagccgaagattta
gtaaatctgtatgctgttagatctactttaaaggggtataagttttctaaagatacagtt
tggcaaagacaatttgaagaagagtttcctcatgaagaaactccagatcaaattactgct
atagaagagataaaaaatgatatgcaatcaaatagaaccatggatagattactttgtgga
gatgtagggtatggaaaaacagaagtagcacttagggcagcttttaaatcagttatggat
ggtaaacaagtagctttcctagttccaactacaatattagcccaacagcattacaataac
ttattaaaaagattttcagatttccctataaatatagaaatggtaagtagattcagaaca
tcagcacagcaaaatgctactatgaaggctttaaaagaaggaaatatagatatattaata
ggaactcatagaattttgcaaaaggatgtacaatttaaagatttaggtcttttagtaata
gatgaagaacaacgatttggtgtaaaacataaggaaaagataaaagaatttaagaaaaat
gtagatgtacttacacttactgctacacctattccaagaacgctacatatgtcattagta
ggggttagagatataagtattatagagacacctccagaagataggtatcctatacaaacc
tatgttgttgaatataacgatcaactcattagagatgctattttaagagaactaaataga
ggtggacagatatattttgtatataacagagtagaaaatataaaagaaattgcaacacat
gtttctaaattggtgccagaagctaaagtcggaatagctcatggtcaaatgaaagaaaga
gagttagaaaaggtagtaatggatttcatgaataaggaacatgatatattggttgctact
accataattgaaactggcatggacatacaaaatgtaaatactatgataatatatgattca
gataaaatgggattatcgcaactataccaattaagaggaagagttggtagaagtagtagg
atggcttattgttatttaacttataaaaaagataaaattttaacagaagtagcggagaaa
agattaaaggcaataaaagagtttacagaattaggatctggatttaagatagctttaaag
gatctagaaataagaggagcgggaaatatgatgggctcatctcaacatgggcatatggct
tcaattggatatgatttatattgtaaaatgctagaggataccataaaagagaaaaaagga
gaaagaaagagagaacctattaatatagtataa
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