Chlorobaculum tepidum: CT0509
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Entry
CT0509 CDS
T00088
Name
(RefSeq) ribonuclease II family protein
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cte
Chlorobaculum tepidum
Pathway
cte03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cte00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CT0509
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cte03019
]
CT0509
03016 Transfer RNA biogenesis [BR:
cte03016
]
CT0509
Enzymes [BR:
cte01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CT0509
Messenger RNA biogenesis [BR:
cte03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CT0509
Transfer RNA biogenesis [BR:
cte03016
]
Prokaryotic type
tRNA degradation factors
CT0509
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
Rrp44_S1
RNase_II_C_S1
Motif
Other DBs
NCBI-GeneID:
1005974
NCBI-ProteinID:
NP_661409
CyanoBase:
CT0509
UniProt:
Q8KF23
LinkDB
All DBs
Position
517042..519204
Genome browser
AA seq
720 aa
AA seq
DB search
MGYGESRQLPGFWYVLHKLQEEGVIDKDSDRCYGWAGFEADTYEEHLIEGPHFPQPGKER
YKVGQIYTGKLTTHPNGYGFVDVDGFDDDIFISADMLGQSLHLDQVEVQVTKVPESYASR
QSPHQRCEGLVVNVIERRLVTVVGTLHRENRRFLLKPDQRKILPEIHIPLKAAKKAKAGD
KVLAGELEFLKSGTIQARVIEILGTAGESQVEVSAIARGLGIDETFEPELLTFAEKVREA
ITDEDLKERLDIRDKDVFTIDPVDAKDFDDALSIETLGNGGGYKVGVHIADVSHYVPENS
ALDKEARKRATSVYLVDRVIPMLPSRLSEKVCSLNPGVDRLAFSVFFNITKKGEVTKFEF
HKTVIHSKRRFTYEDVQQILDAGKGDYFRELQALDQLSKKIRAQRMESGGLEFETEEVRF
KLGSNGEPVEVIKKERLDSHRLIEEFMLLANRTVAAYLTARYAENEKNPHPVIYRVHGAP
QMEKVQVLASFVRKIGFDLKLDRKGKDSATVSSKALRELLQKVRGTNVEFLVNELVLRSM
SKAVYSPLNDGHFGLGFEHYTHFTSPIRRYPDLIVHRILFEYETTRKKRRKVTPERISQI
TATITEVCQITNEREKIATEAERESIKLKQVEYMSAHLGNTYDGVITGATEYGIYVRMTD
FAIEGLVHMRNLKDDYYEYDEATYSLVGRRKHRRLQIGQRLKVKVHEVDLTRRTIDLTLA
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgggctacggcgagtctcgccagcttcccggcttctggtatgtcctgcacaagttgcag
gaagaaggcgtcatcgacaaggacagcgaccgctgctacggttgggctggtttcgaggcc
gatacctatgaggagcacctcatcgaggggcctcactttccgcaacccggcaaggagcgc
tacaaggtcggtcagatatacaccggcaagctgacgacccatccgaacggctacggcttt
gtggatgtcgatggttttgacgacgatattttcatcagtgccgacatgcttggccagtcg
ctgcatctcgaccaggtcgaggtgcaggtcaccaaagtacccgaatcctatgcttcgcgc
cagtcgccgcaccagcgctgcgaaggcctcgtcgtcaacgtgatcgaacgcaggcttgtg
accgtggtcggcacgctgcaccgcgagaatcgccgtttcctgctcaagcccgatcagcgc
aagattctgcccgagattcatattcccctcaaggcggccaaaaaggccaaggccggtgac
aaggtgcttgccggagagctggagttcctcaagagtggcactattcaggccagggtgatc
gagattcttggcacggcgggcgaatcacaggtcgaggtgagcgctatcgctcgcggtctc
ggtatcgacgaaaccttcgagccggagctcttgaccttcgccgaaaaggttcgcgaagca
attaccgatgaggatctgaaggagcgactcgacatccgcgacaaggatgtttttaccatc
gatccggtcgatgcgaaggatttcgacgacgcgctctccatcgagacgcttggcaatggc
ggcggctacaaggtcggcgtgcacatcgccgacgtgtcgcactatgtgccggagaattcg
gcactcgacaaggaggcccgcaagcgcgcgacctcggtctatctggttgatcgcgtgatt
ccgatgctgccctcccgcctctccgaaaaggtgtgcagccttaatccgggggtggatcgc
ctggctttctcggtctttttcaacatcaccaaaaagggtgaggtcacgaagtttgagttt
cacaagacggtcatccattcgaaacgccgcttcacctatgaggatgttcagcagattctc
gatgcgggcaagggcgattacttcagggagttgcaggcgctcgaccagctcagcaagaag
atccgtgcccagcgcatggagtcgggcgggcttgaattcgagaccgaggaggtgcgcttc
aaacttggcagcaatggcgagcctgtcgaggtgatcaagaaggaacggctcgacagccac
cgcctgatcgaggagttcatgctgctggccaaccgcacggtggctgcttacctgactgcc
cgttatgccgagaacgaaaagaatccccatccggtgatctaccgcgtgcacggcgcgccg
cagatggagaaggtgcaggtgctggccagcttcgtgcgcaagattggctttgacctcaag
ctcgaccgcaagggcaaagacagcgccacggtgtcgtccaaagcgctgcgcgagctgttg
caaaaggtgcgcggcaccaacgtcgagttcctggtcaacgagctggtgctgcgctccatg
tcgaaggcggtttattcgccgttgaacgacggccacttcggcctcggtttcgagcactac
acgcactttacctcgcccatcaggcgctaccctgacctgatcgtgcaccgcattttgttc
gagtacgaaacgacgcgcaaaaagcgccgcaaggtcacgcccgaaaggatcagccagatc
accgcgactatcaccgaggtgtgccagatcactaacgagcgcgagaagatcgctaccgaa
gcggagcgcgagtcgatcaagctcaagcaggttgagtacatgtcggcgcatctcggcaac
acctacgacggcgtcatcaccggtgccaccgaatacggcatctacgtgcgcatgaccgac
tttgccatcgaaggcttggtgcatatgcgcaacctcaaggacgactactatgagtacgac
gaggctacctactcacttgtcggcagacgcaaacaccgccgcttgcaaatcggccagcgg
ttgaaggtaaaggtgcacgaagtcgatctgacaagaagaacaatcgatctcacgctggcg
tga
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