Yamadazyma tenuis: CANTEDRAFT_117182
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Entry
CANTEDRAFT_117182 CDS
T03099
Name
(RefSeq) ATP-dependent DNA ligase
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cten
Yamadazyma tenuis
Pathway
cten03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cten00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CANTEDRAFT_117182
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cten03400
]
CANTEDRAFT_117182
Enzymes [BR:
cten01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CANTEDRAFT_117182
DNA repair and recombination proteins [BR:
cten03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
CANTEDRAFT_117182
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
DOCK_N
Motif
Other DBs
NCBI-GeneID:
18248553
NCBI-ProteinID:
XP_006683653
JGI:
Cante1_117182
UniProt:
G3AXI9
LinkDB
All DBs
Position
Unknown
AA seq
903 aa
AA seq
DB search
MSFLDQIPPITNLQDPEFSFLVTELFNPLDAVNRESLGSFPNITSKKRDIISRFLKTYKA
HIGSDIYPSIRLVLPNKDSRKYYMRHTELVSFIIKMYNIPNESNHTKLLREWKTQFHHLQ
LQNSDPNLSHLPRKICQVIGNRRSLQHKITKKYSVNQINEVLDQLSNATKTEDRIKILRP
VFDNLQIDEIRWLLNIILKISNAGYMERFVFELWNENCYGLYTVCHDLSKAFRYFSVHDS
IDQKQLIPHVNFPFIPQASQKLTASYTKLCSEMSEFYIEEKIDGDRMVLHYNNNKFKFFS
RRCRDYSLLFGENFEVGSLTKHLKNVFHPKVTKLILDCEIVAFDADRKCILPFGTLRKAA
IQEAVKEFTTTDMFSEHGCWPYLLVFDILQVNDTSLVNAPLYQRKLALEKAIIEVPNRLE
ILKYKLCKDPIDIENAVKGVIVDRSEGIMVKNTMSKYHVAKRDNSWIKVKPEYLESFGEN
LDLVVIGVLPGIKNSYMCGLYDTETHMWRSFCTVANGFTNEEFAELDRLMKDKLSRVCPE
NVMFGRRKPQYYLNPEESVVLEIKARVYDQRTDETYATNTTLRNLYCRGIRHDKSWDDCI
SYQSYEEQRSDRTKDIYETQDVNKRRRVKEESFTETTFRENMKANMELFKDYRFVVLSDK
LDQVENMRISLESLKNLIKKFGGEIITSPSYSKSKPCLVISEKLTPRCRAYVELGLDIVH
PNWLFYCIEYGKIIPMECLTVFESKNKVPENFDEYGDSFAVTPRMNLKDYLLSLKIEKSP
SHQIINDLSGELESYRLLKDILAGSKFLIISNGIQCTKTILATKIQQFGGTVVEKLPCEY
IIVPRSLYKKSRKAMLSEVRRLSQQISNTYTKGTRIPNIVIESFIDSTIESSVKVDPQDH
KVL
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atgtcattcctcgatcaaatacctcccatcacgaatctacaggacccagagttctccttc
ttggtaacagagctcttcaatccacttgatgcggtaaacagggagagcttgggactgttc
cccaatattacttccaaaaaacgagatatcatctccaggtttttgaaaacttataaagcc
catatcggtagtgatatatatccaagtatacggcttgtacttcccaataaggacagtaga
aagtactatatgcgacatacggaattggtatccttcattattaagatgtataacattccc
aacgagtctaatcataccaaattacttcgtgaatggaaaactcaattccaccatctccag
ctccagaactcggatccaaacttgtcacatctccccaggaaaatttgtcaggtaataggt
aaccgtcgaagtctccagcataaaatcaccaaaaagtactctgtgaaccagataaatgaa
gtgttggatcaattgtcgaatgctaccaaaactgaagacagaatcaagatattgagacca
gttttcgataatctccaaattgatgaaatcagatggttgttgaatatcatcttgaaaata
tccaatgctggatatatggaaagatttgtgtttgaattatggaacgaaaactgctatggt
ctttacacggtatgtcatgatctatccaaggcattcaggtactttagtgttcatgattca
attgaccagaagcaattgattccgcatgtcaactttccatttataccacaagcttcccag
aaattgacggctagttataccaaactctgttcagagatgtcagaattctatattgaagaa
aagatcgatggtgatcggatggtgctacattataataacaataaattcaagttcttctct
agaagatgcagagactatagtttattgttcggggaaaactttgaagtgggttctttaacc
aagcatctcaagaatgtgtttcaccccaaggttactaaactaatacttgattgtgaaatt
gtagcatttgatgctgatagaaagtgtattttaccattcggaaccttgagaaaagctgcc
attcaggaagcagtaaaggagtttacaacaactgatatgttttctgaacatggttgctgg
ccttatcttttggtgtttgatatactccaagtaaatgacacctccttggtaaacgcccct
ttgtatcaaagaaaactagcactagaaaaagctataattgaggttcccaacaggttggag
atcttaaagtacaagctctgtaaagatccgattgatattgagaatgcggttaaaggtgtt
attgtcgacagaagcgaaggaatcatggtaaaaaatacaatgtcaaagtatcacgttgca
aaaagagataactcctggatcaaagtaaagccagagtacttggaactgtttggagagaac
ttggatctcgttgtgattggagtccttccaggtataaagaacagctatatgtgtggtctt
tatgacactgaaactcatatgtggagaagcttctgtaccgttgccaatggtttcacaaat
gaagaatttgccgagcttgacagacttatgaaagataagctctcgagagtatgtcctgaa
aacgtgatgtttggtaggcgtaaacctcaatattatctaaatcctgaagaatcggttgtt
ctagaaataaaggctagagtttatgaccagagaacagacgaaacatatgccaccaatacc
acgttaaggaatctctattgcagaggcattagacatgataagctgtgggatgactgcatt
ctgtaccaatcatatgaagaacaaaggagcgaccggactaaagatatttatgaaacgcag
gacgttaataagagaagaagagttaaagaagagtcgtttactgaaacaacttttagagaa
aacatgaaagcaaatatggaattattcaaggattaccgattcgtggttctctctgataaa
ttagatcaagttgaaaacatgagaatactgcttgaaagtttgaaaaatcttatcaagaaa
ttcggtggagagatcattacaagcccatcgtattcgaaatcaaagccatgtttggttatc
tccgaaaagcttacaccgagatgccgggcctatgtagaactagggttagatatagtacac
cctaattggttattctactgcatagagtatggaaagattattccgatggaatgtttgact
gtgtttgaatccaaaaacaaggtgcccgaaaactttgacgagtatggggatagttttgca
gtgactcccagaatgaatctcaaagactatttgctactgttgaaaatagagaagtcccca
tcgcaccaaattataaatgatttgagtggggaactcgaatcataccggttgctaaaagat
atcttggcaggatccaaatttctaatcatttccaacggcatacaatgtactaaaactatt
ttagcaaccaaaatccagcagtttggaggtacagtagtggagaaattgccatgtgaatat
ataatagtcccccgactgttgtacaaaaagagccgaaaagcaatgctctcagaagttaga
cggcttctgcaacaaatcagcaacacatacaccaaagggacccgtatacccaacattgtg
atagagtcatttatagacagcaccattgaatccagcgtaaaagtggatccccaagaccat
aaagtgctctaa
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