Clostridium tetani 12124569: BN906_00176
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Entry
BN906_00176 CDS
T02905
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ctet
Clostridium tetani 12124569
Pathway
ctet03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ctet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BN906_00176
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ctet03400
]
BN906_00176
Enzymes [BR:
ctet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BN906_00176
DNA repair and recombination proteins [BR:
ctet03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BN906_00176
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CDI48236
LinkDB
All DBs
Position
148231..151752
Genome browser
AA seq
1173 aa
AA seq
DB search
MRLNGILKPLKDSKEFKNIKDNIKNKKYPINIIGLEDSSKSYLIKGVYDEIDKPLLILTH
SDIEAKNIYEDLFFYEPNVHYFPSKEVVFYNVDAISGDLRWERLKIIKRILEPGKKIIVT
SIESIAPICIPLNLYKEYFFKFSIGDVVDYKDLNEKLLKSGYERVDLVYNKAQFSIRGGI
LDIFPPTSSEPYRIEFFDNEIDSIRNFNTESQRSIEKVDCIEVFPAKEIILNKENIDSAC
EKIMMDLERIGNNLESLNNKESFDKLKNSIDKNIESLKETWGFETIDSYLPYLYDTTTSF
LNYFKDCFVVVDDIQRCQGKLDSVYYEYYDSYDSFLKRGDILPAQGELLIPKEDIWEALE
ESKVMTLSVLPKKTDVLKERQTVSFKEITSQNYQGQIDLLIEDIEKRKEEKYKIVILAGT
RARGERLVDTLRDRGIESVYKDVIDKILPGEVVITFGSQIKGYEYPDFKLCIISDKEVFG
EAKRRKNKKLTNKKGFSRIKSFTDLKPGDYIVHVNHGIGVYKGIKQLEVGGHRKDYLELT
YYGDDKLYVPVEQLDIVQKYIGGEGKTPKINKLGNAEWTKTKNKAKKSIEEIAEDLVNLY
AVRSTLKGYKFSKDTVWQRQFEEEFPYEETPDQITAIEEIKNDMQSSRTMDRLLCGDVGY
GKTEVALRAAFKSVMDGKQVAFLVPTTILAQQHYNNLLKRFSDFPINIEMVSRFRTPAQQ
NATMKALKEGNIDILIGTHRILQKDVQFKDLGLLVIDEEQRFGVKHKEKIKEFKKNVDVL
TLSATPIPRTLHMSLVGVRDISIIETPPEDRYPIQTYVVEYNDQLIRDAILRELNRGGQI
YFVYNRVENIKEIAAHVSKLIPEAKVGIAHGQMKERELEKVIMDFMNKEHDILVATTIIE
TGMDIQNVNTMIIYDSDKMGLSQLYQLRGRVGRSSRMAYCYLTYKKDKILTEVAEKRLKA
IKEFTELGSGFKIALKDLEIRGAGNMMGSSQHGHMASIGYDLYCKMLEDTIKEKKGERKR
EPIETAVEIKVDAYIPNNYIKDESQKIEIYKKIASINSYEDYMDIQEELEDRYSNIPLSV
QNLMDIAYIRSIAKELGIEEIKEKGEEVLIQFQSIEDLNQKMMIDIKTNFNRIVSFKFGE
KAILGYRLERIKKEDLLNKLKEFIIYLKELKVK
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgagattaaatggtattctaaagccattaaaggatagtaaggaatttaaaaatataaaa
gataatataaaaaataaaaaatatcctataaatataatagggcttgaagactcttctaag
agctacttaattaagggagtgtatgatgaaatagacaagcctttattaatacttactcat
agcgatatagaagcaaaaaatatttatgaagatttattcttttatgaaccaaatgtacat
tactttcccagcaaagaagtagtattttataatgtagatgctatttctggagatttaaga
tgggaaagactaaaaataataaaacgtatattagaacctggtaaaaaaattatagttacc
tctatagaatcaatagcaccaatatgtataccattaaatctatataaagagtatttcttt
aagttctctataggggatgtagtggactataaggatttaaatgagaaacttttaaaatca
ggatatgagagagtggatttagtatacaataaagctcaattctctataagaggtgggata
ttagatatctttccaccaacgtcatcagaaccctatagaatagaattttttgataatgag
atagattctataaggaattttaatactgaatctcaaagaagtatagaaaaagtggactgt
atagaagtatttccagctaaggagattatattaaataaagaaaacatagattctgcttgt
gaaaaaattatgatggatttggaaaggattggaaacaacttagagtctttaaataataaa
gaatcttttgataagttgaagaacagcattgataaaaacatagaaagtttaaaggaaaca
tggggttttgaaactatagatagttatttgccgtatttatatgatactactacatctttt
ttaaattattttaaggattgctttgtagtggtagatgatatacagagatgtcaaggtaaa
ctagatagtgtatattatgaatattatgatagttatgatagttttcttaaaagaggagac
atacttccagcacaaggagagttattaataccaaaagaagatatatgggaagcattagaa
gaaagtaaagttatgactttgagtgtattacctaaaaaaacagatgttttaaaggaaaga
caaactgttagttttaaggagattacatcacaaaattatcaaggacaaattgatttgctt
atagaagatattgaaaaaagaaaagaggaaaaatataagatagtaattcttgctggtact
agagccaggggagaaagacttgtagacactttaagagatagaggaatagaaagtgtttat
aaggatgtaatagacaaaattttgccaggagaagtagttataacctttgggagtcaaata
aaaggttatgaatatccagattttaaattatgtattatatcagacaaagaggtatttgga
gaagcaaaaagaagaaagaataaaaagcttactaataaaaaaggatttagtagaataaag
agttttacagatttaaagccaggagattatatagttcatgtaaatcatggaataggggta
tataaaggaattaaacaattagaagttggagggcacagaaaagattatttagaactaaca
tattatggtgatgataagctttatgtaccagtggaacaattagatatagtacaaaaatat
atagggggagagggaaaaactcctaaaataaataagttaggcaacgctgaatggacaaaa
accaagaataaagctaagaagtctatagaggaaatagccgaagacctagtaaatctgtat
gctgttagatctactttaaaggggtataagttttctaaagatacagtttggcaaagacaa
tttgaagaagagtttccttatgaagaaactccagatcaaattactgctatagaagagata
aaaaatgatatgcaatcaagtagaactatggatagattactttgtggagatgtaggatat
ggaaaaacagaagtagcacttagggcagcttttaaatcagttatggatggtaaacaagta
gctttcctagttccaactacaatattagcccaacagcattacaataatttattaaaaaga
ttttcagattttcctataaatatagaaatggtaagtagattcagaacaccagcacagcaa
aatgctactatgaaggctttaaaagaagggaatatagatatattaataggaactcataga
attttgcaaaaggatgtccaatttaaagatttaggtcttttagtaatagatgaagaacaa
cgatttggtgtaaaacataaggaaaagataaaagaatttaagaaaaatgtagatgtgctt
acacttagtgctacacctattccaagaacgctacatatgtcattagtaggagttagagat
ataagtattatagagacacctccagaagataggtatcctatacaaacctatgttgttgaa
tataacgatcaactcattagagatgctattttaagagagttaaatagaggtggacagata
tattttgtatataatagagtagaaaatataaaagaaattgcagcacatgtttctaaattg
ataccagaagccaaagttggaatagctcatggtcaaatgaaagaaagagaactagaaaag
gtaataatggattttatgaataaggaacatgatatactagttgccactaccataattgaa
actggcatggacatacaaaatgtaaatactatgataatatatgactcagataaaatggga
ctatcccaactataccaattaagaggaagagttggtagaagtagtaggatggcttattgt
tatttaacttataaaaaagataaaattttaacagaagtagcggagaaaagattaaaggca
ataaaagagtttacagaattaggatctggatttaagatagctttaaaggatttagaaata
aggggagcgggaaatatgatgggctcatctcaacatgggcatatggcttcaattggatat
gatttatattgtaaaatgttagaagacactataaaagagaaaaaaggagaaagaaagaga
gaacctatagaaactgctgtggaaatcaaagtagatgcatatattcctaataattatata
aaagatgaaagtcaaaagatagagatatataaaaagattgctagtattaactcctatgag
gattatatggatatacaagaagagttagaggatagatattctaatatacctttatctgta
cagaatcttatggatatagcttatataagaagtatagcaaaggaacttggaatagaggaa
ataaaggagaaaggagaagaagtattaatacaattccaaagcatagaggatttaaatcag
aagatgatgatagatataaaaactaattttaatagaatagtttcctttaaatttggcgaa
aaagcaatattagggtacagacttgaaagaataaaaaaggaagatttattaaacaaattg
aaggaatttattatatacttaaaagaactgaaggttaaataa
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