Comamonas terrigena: CT3_03260
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Entry
CT3_03260 CDS
T09012
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ctez
Comamonas terrigena
Pathway
ctez03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ctez00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CT3_03260 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ctez03021
]
CT3_03260 (rpoC)
03400 DNA repair and recombination proteins [BR:
ctez03400
]
CT3_03260 (rpoC)
Enzymes [BR:
ctez01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CT3_03260 (rpoC)
Transcription machinery [BR:
ctez03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CT3_03260 (rpoC)
DNA repair and recombination proteins [BR:
ctez03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CT3_03260 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
BBL22871
LinkDB
All DBs
Position
352910..357127
Genome browser
AA seq
1405 aa
AA seq
DB search
MKSLLDLFKQFTPDEHFDAIKIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVVTDPGMTPLKKFSIMSEDDYDAKQREFGYDEFTAK
MGAEGIKDLLEGIDIDSEIERLRGDLTGSEVKVKKNAKRLKLLEAFKKSGIKPGWMVMEV
LPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRMLQE
AVDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVITVGPYL
KLHQCGLPKLMALELFKPFIFSRLEQMGIATTIKAAKKEVESGSPVVWDILEEVIKEHPI
MLNRAPTLHRLGIQAFEPILIEGKALQLHPLVCAAFNADFDGDQMAVHVPLSVEAQMEAR
TLMLASNNVLFPASGEPSIVPSQDVVLGLYHATRDKINGKGEGMVFMDTNEVQRALDSGE
AELHAKISVRLPQWTKDKETGEFVKSVSLVHTTVGRALLSEILPKGLDFSNINKALKKKE
ISKLINASFRKCGLKATVVFADKLLQNGFRLSTHAGFSVAIDDMLVPPQKADILARAEAE
VKEIEQQYVSGLVTAGERYNKVVDIWGKAGDDVSKVMMDQLKVQKTTDRDGNQVDQESFN
AIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVVNEQDCGTYNGYLMRAIVEGGEVIESLRDRVL
GRSTAEDVLHPETRVVLLRAGTLLDEDTIEELEAQGVDEIKVRTALTCETRFGLCATCYG
RDLGRGGLINMGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGSISF
NPTMRYVSNTKGELVVISRSGEIVISENGRERERHKVPYGAILTVKPDEAIKAGKILANW
DPLTRPIITEYAGQVKFENVEEGLTVAKQVDEVTGLSTLVVIDPKRRGSAKVVRPQVKLI
DANNQEVKIPGTDHAVTIGFQVGALIQVRDGQDVGPGEVLARIPVEGQKTRDITGGLPRV
AELFEARTPKDKGTLAEMTGTISFGKETKGKIRLQITDLEGKVWEELVPKERNILVHEGQ
VVNKGESIVDGPADPQDILRLLGIEELSRYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVVIENPGDTTYIQGEQVERSEVLNTNEAAQRDGKIPATYSNVLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAYHQARKAKDAMDEAERRA
IAEAEAAELAGVTADESVAGDDSAA
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcgttactcgacctgttcaagcaattcacgccggatgagcacttcgatgccatc
aagatcggcctggcttcgcccgagaaaattcgttcctggtctttcggtgaggtgaagaag
cccgagaccatcaactaccgtacgttcaagcccgagcgcgatggtctgttctgcgccaag
atctttggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgtctgaagcac
cgcggcgtgatctgcgagaagtgcggcgtggaagtgacccagaccaaggtgcgccgtgag
cgcatgggccacatcgatctggctgcgccttgcgcccacatctggttcctgaagtccctg
ccttcgcgcctgggtctggtgctggacatgacgctgcgcgacatcgagcgcgtgctgtac
ttcgaagcctatgtggtgaccgaccccggcatgaccccgctgaagaagttcagcatcatg
tccgaagacgactacgacgcgaagcagcgtgaattcggctacgacgagttcaccgccaag
atgggcgccgaaggtatcaaggacctgctggaaggcatcgatatcgacagcgaaatcgag
cgtctgcgtggcgatctgaccggctccgaagtcaaggtcaagaagaacgccaagcgcctg
aagctgctggaagcgttcaagaagtccggcatcaagcccggctggatggtcatggaagtg
ctgcccgtgctgcctcccgacctgcgcccgctggtgccgctggacggcggccgctttgcg
acctccgacctgaacgacctgtaccgccgcgtcatcaaccgcaactcgcgtctgcgccgt
ctgctggagctgaaggctcccgagatcattgcgcgcaacgaaaagcgcatgttgcaggaa
gccgtggacagcctgctggacaacggccgccgtggcaaggccatgacgggcgccaacaag
cgtgccctgaagtcgctggccgacatgatcaagggcaagagcggtcgtttccgccagaac
ttgctgggcaagcgcgtggactactccggtcgttccgtgatcaccgtgggtccttacctc
aagctgcaccagtgcggtctgcccaagctgatggcgctggaactgttcaagcctttcatc
ttctcccgtctggagcagatgggcattgccacgaccatcaaggccgccaagaaggaagtg
gaatccggcagccccgtggtgtgggacattctggaagaggtcatcaaagaacacccgatc
atgctcaaccgtgcgcctacgctgcaccgtttgggtatccaggcgttcgagcccatcctg
atcgaaggcaaggccctgcaactgcacccgctggtctgcgcggcattcaacgccgacttc
gacggtgaccagatggctgtgcacgtgcccctgtccgtggaagcacagatggaagcccgc
acgctgatgctggcctccaacaacgtgctgttccccgcttcgggcgaaccctccatcgtt
ccttcccaggacgtggtgctgggtctgtaccacgcgacccgcgacaagatcaacggcaag
ggcgaaggcatggtgttcatggacaccaacgaagtccagcgcgcgctggattccggtgaa
gccgagctgcatgccaagatcagcgtgcgtctgccccagtggaccaaggacaaggaaacc
ggcgaattcgtcaaatccgtgagcctggtgcacaccacggtgggccgtgccctgctgtcg
gaaatcctgcccaagggcctggacttcagcaacatcaacaaggcgctgaagaagaaggaa
atctccaagctcatcaacgcttcgttccgcaagtgcggtctgaaggccaccgtggtgttt
gccgacaagctgctgcagaacggtttccgtctgtcgacgcacgccggtttctccgtggcc
atcgacgacatgctggtgcccccgcaaaaggccgacatcctggcccgcgcggaagctgaa
gtgaaggaaatcgagcagcagtacgtctccggtctggtgacggctggcgagcgctacaac
aaggtggtggacatctggggcaaggccggtgacgacgtgtccaaggtgatgatggaccag
ctgaaggtccagaagaccaccgaccgcgacggcaaccaggtggaccaggagtcgttcaac
gccatctacatgatggccgactccggtgcccggggttctgcagcgcagattcgccagctg
gccggtatgcgtggcctgatggccaagcctgacggctccatcattgagacgcctattacc
gcgaacttccgcgaaggcctcaatgtgttgcagtacttcatctcgacccacggtgcccgt
aagggtctggccgacacggcgttgaagaccgcgaactcgggttacctgacccgccgtctg
gtggacgtgacccaggacctggtcgtgaacgagcaagactgcggcacctacaacggttat
ctgatgcgcgccatcgtcgaaggcggtgaagtgatcgaatccctgcgcgaccgcgtgctg
ggccgttcgaccgccgaagacgtgctgcatcccgaaacccgcgtggtgctgctgcgcgcc
ggtacgctgctggacgaagacacgatcgaagagctggaagcccagggcgtggacgagatc
aaggtgcgtacggcgctgacctgcgaaacccgtttcggtctgtgcgcaacctgctacggc
cgtgacctgggtcgcggtggcctgatcaacatgggcgaagcggtgggcgtgatcgctgcg
cagtccatcggtgaacccggtacccagctgaccatgcgtacgttccacatcggtggtgcg
gcttcgcgtgcagccgtggcctcgagcgtggaagccaaatcgaacggttcgatcagcttc
aacccgaccatgcgctatgtgagcaacaccaagggtgagctggtcgtgatttcgcgttcg
ggcgagatcgtgatctccgaaaacggccgtgagcgtgagcgtcacaaggtgccttatggc
gccatcctgaccgtcaagcccgatgaagccatcaaggccggcaagatcctggcgaactgg
gatccgctgacccgccccatcattaccgaatacgccggtcaggtgaagttcgagaatgtg
gaagaaggcctcaccgtggccaagcaggtcgacgaagtgacgggtctgtccaccctggtg
gtgatcgaccccaagcgccgcggttctgccaaggtggtgcgtccccaggtcaagctgatc
gatgccaacaaccaggaagtcaagatccctggtaccgaccacgccgtgacgatcggcttc
caggtcggcgcgctgatccaggtgcgtgacggtcaggacgtgggccccggcgaagtgctg
gcccgtatccctgtggaaggtcagaagacccgcgacattaccggtggtctgccccgtgtg
gccgagctgttcgaagcccgtacgcccaaggacaagggcacgctggccgagatgaccggc
acgatctccttcggcaaggaaaccaagggcaagatccgcctgcagatcaccgatctggaa
ggcaaggtctgggaagagctggtgcccaaggagcgcaacattctggtccacgaaggccag
gtggtgaacaagggtgaatcgattgtggacggtccggccgatccgcaggacatcctgcgc
ctgctgggtatcgaagagctgtcgcgctacatcgtggacgaagtgcaggacgtgtaccgt
ctgcagggcgtgaagatcaacgacaagcacatcgaagtgatcgtgcgccagatgctgcgt
cgcgtcgtgatcgagaaccctggcgataccacctacatccagggtgaacaggtcgaacgc
tccgaagtgctcaacaccaacgaagcggcgcaacgcgacggcaagatacctgccacgtac
tccaacgtgctgctgggtatcaccaaggcttcgctgtcgaccgactccttcatctctgcg
gcttccttccaggaaaccacccgcgtgctgaccgaggctgccatcatgggcaagcgcgac
gagctgcgcggtctgaaggaaaacgtcatcgtgggtcgtctgatccccgctggtaccggt
ctggcctaccaccaggcacgcaaggccaaggacgccatggacgaggccgagcgccgcgcc
atcgccgaagccgaagcggccgagctggctggcgtgacggctgacgagtccgtcgcaggt
gacgacagcgccgcgtaa
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