Clostridium thermosuccinogenes: CDO33_18845
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Entry
CDO33_18845 CDS
T05300
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cthd
Clostridium thermosuccinogenes
Pathway
cthd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cthd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDO33_18845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cthd03021
]
CDO33_18845
03019 Messenger RNA biogenesis [BR:
cthd03019
]
CDO33_18845
Transcription machinery [BR:
cthd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CDO33_18845
Messenger RNA biogenesis [BR:
cthd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CDO33_18845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA
NACHT
Endonuc-dimeris
Spore_III_AA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AUS98332
UniProt:
A0A2K2FED6
LinkDB
All DBs
Position
complement(4325754..4327748)
Genome browser
AA seq
664 aa
AA seq
DB search
MEDINLKGKTLEDLRYIAKMMNIKNISRLKKDELIEKILEEGRKTENVDNKSNIEQEQPQ
EAVPEVVVKRRRRTAASKAEKADIPVEEQQEAAKQDPGSIESGREADKVEAAEVKEEIKE
EVKDEDKQKPSEALEEAGTVKKTRRGRPSKKAAKEEKTEPEKAEEESPKDTSKADLEIKE
PVEERASEQTAAEAPVAEQIEIQMPEAGQTEDVKAETEQREGEQAKAEPQTRERVRREKT
AQTAETKTENKLAAEPEKEAEKSEKIVERQQEQRREGLVAYPTPIYEKIESDDPVEGVLE
VLPDGYGFLRSDNYLSGSRDVYVSPSQIRRFGLKTGDKVKGKGRIPKEGEKFQALLYVQS
VNGDPPEVASKRVPFEHLTPIYPDQRITLETTPRELSTRLIDLIAPIGKGQRGMIVSPPK
AGKTILLKKIANAITANYPEIELIVLLIDERPEEVTDMQRNIKGDVLYSTFDEVPEHHIK
VAEMVLERAQRLVEQKKDVVILLDSITRLARAYNLTIPPTGRTLSGGLDPGALHKPKKFF
GAARNIENGGSLTIMATALIETGSRMDDVIFEEFKGTGNMELHLDRRLSEKRIFPAIDIN
RSGTRREELLLSQKELESIWAIRKAMSNMGTAEVTEMLINRLMQTKTNEEFINGINLAFL
EKEK
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggaagatattaatcttaagggaaaaactttggaagatttgcgttatattgcaaaaatg
atgaatataaagaatatttcgaggctgaaaaaagatgaattgatagaaaaaattctggaa
gaaggcagaaaaactgagaatgttgacaataaatcaaatatagaacaggaacagccacaa
gaggcggttccggaggttgttgtaaaacgcagaagaagaactgcggcttccaaagctgaa
aaggccgatataccggtggaagagcagcaggaagcggcaaaacaagaccccggaagtatt
gaaagcggccgggaggctgataaagttgaagctgccgaagtaaaagaagaaattaaagaa
gaagtcaaggatgaagataagcaaaaaccgtcagaggctttggaagaagccggtacggta
aaaaagacaaggcgcggcagaccgtcgaaaaaggctgccaaagaggaaaaaactgagccg
gaaaaggctgaggaggaatctccgaaagatacttccaaagcagatttggagattaaagag
cctgttgaagagcgggcttcggagcaaactgctgcagaggcacccgttgccgagcaaata
gaaattcagatgccggaagccggacagactgaggatgtgaaagccgagactgaacagcgt
gaaggtgaacaggctaaagcggagcctcagaccagagaaagggttagaagagaaaaaacg
gcgcaaactgctgaaacaaagacagaaaacaagctggcggctgagccggaaaaagaagct
gagaaaagtgaaaagattgttgaaaggcagcaagagcaaagacgggaaggattggtggct
tatccaacccccatctacgaaaagatcgagagcgatgatcctgtggaaggggtactggag
gttctgcccgacggatatggctttttgagaagtgataattacctttcagggtcaagagat
gtttatgtttctccttcgcaaatcaggcgttttggattaaaaaccggtgacaaggtaaag
ggaaaaggcaggataccaaaagaaggagaaaagttccaggcgcttttatacgttcagagc
gttaacggagatccgccggaagtcgcttccaagagagtgccttttgagcatcttacgcca
atataccccgatcaaagaataacccttgagacgacgccaagggagttgtccacaagattg
attgacctgatagcgcctatagggaagggacagcgcggaatgattgtttcccctcctaaa
gcaggtaaaaccattcttctgaaaaagatagccaacgcaataacagctaattatcctgaa
atagaactgatagttttgcttatagacgaaaggccggaagaagtaaccgatatgcagagg
aacattaaaggtgatgtgttgtattccaccttcgacgaagttcccgagcatcacataaag
gttgctgaaatggttttggaaagggcacagaggcttgtagagcagaaaaaggatgtagta
atccttctggatagcatcacaaggcttgccagggcttataacctgactataccgccaaca
ggaaggactctttccggtggtcttgatccgggagctctgcataagcccaagaaattcttc
ggagcagccaggaacattgaaaacggtggaagtcttaccattatggctacagctcttatt
gaaaccggcagcagaatggatgatgtcatttttgaagaattcaaagggaccggtaacatg
gagctgcatctggacagaagattgtcggaaaagcgtattttcccggcgatagatattaac
aggtccggaaccagaagagaagagctgcttttaagccagaaggaattagagagcatctgg
gctataaggaaggccatgagcaatatgggtacggcggaagtgacggaaatgttgatcaac
cgcctgatgcagaccaagaccaatgaagagtttataaacggcatcaaccttgcattcttg
gaaaaagaaaaataa
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