Thermochaetoides thermophila: CTHT_0002050
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Entry
CTHT_0002050 CDS
T03100
Name
(RefSeq) hypothetical protein
KO
K14328
regulator of nonsense transcripts 3
Organism
cthr
Thermochaetoides thermophila
Pathway
cthr03013
Nucleocytoplasmic transport
cthr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cthr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
CTHT_0002050
03015 mRNA surveillance pathway
CTHT_0002050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cthr03019
]
CTHT_0002050
Messenger RNA biogenesis [BR:
cthr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
CTHT_0002050
mRNA cycle factors
P-body specific factors
CTHT_0002050
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
18254243
NCBI-ProteinID:
XP_006690753
UniProt:
G0RZ83
LinkDB
All DBs
Position
Unknown
AA seq
805 aa
AA seq
DB search
MATPVLLSRRANGATATQTNDESKAPKAKPPPQGEKIVIRRLPPGMTEDEFLKILGDEWK
PGNGKVDWLTFWPGKVSQHPSKPSRPARAYLHVIQRDLLPALLQTVQGAKWEDAKATWDD
PALISPPTVEFAVYKKIPGDKKRVDSKQGTIDSDPEFMAFLEALANPDAVKETRPELETS
AEEAAKNAVVTTTPLIEYLKEKRAAKAKELAAAKSAAKHARQESQNTKGKGAAAADDSKK
KSKDGRGDRDRDRDRDRDRDRDRDRDRDRESERKPKESVKILTKKAASEAANKKAVAAAE
AAAEAAKAAAAQLQQASQQNEKPSATEPLPKNRKAGIANAARILQRDLGLAPAKSARKAR
QEAAKSEAESKSTPSPKQGKEVSSKEATPASPAPAATHTPPSAQPSSSPTHEKGPSSTPA
GKGRGKKRGGGPGGGDDDNKPKTNPKKDNKGEKSSEQVPPKPTMILKKNKDSQHQQQQNT
SPSQAQPQHSTNQPQQQQQQRPSTQANKPQSPNNPKNTGGGGGGGQNPKKNEKQNQTANQ
NANPPSQQSSTPTPGATRAFIKHAPASQGVTDVLLREALSAFGTVTSVEIADRKKGFAYV
DFAEPSGLAKAMAASPVAVAQAMVTVLERREMAGKKGKGEREKEGGKKDGQGHGKDKGER
EREKKGRDQKGENNEEEKEKEREKEKEKEKEKEKEKEKEKEKEKEKEKQKQKENKAVVAA
AGGEGQQQQGQAQGQGQGQHKRGGRRRGGRGREKDGKEGGKEGGGEGKESGGRGGSGHHG
GKDGSGKKGGAEGAAAKGAPADNSS
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atggccactccagtcctactttcgagaagagcgaacggcgccacggccacccagaccaac
gatgagtctaaggcacccaaggcgaagccgcctcctcaaggcgagaagatagtcatccgt
cgcttgcccccagggatgacggaggatgagtttctgaagatcttgggcgacgagtggaag
ccgggaaacggtaaagtcgactggctcaccttctggccaggcaaggtctcgcagcatcca
tcaaaaccatcacgacctgcacgtgcctatctccatgtgattcaaagggacctgttgcca
gcactgctacagacagtgcagggggcgaaatgggaggatgctaaagcaacgtgggacgat
cccgctttgatctcaccccctactgtcgaatttgcggtctacaaaaagatccccggcgac
aagaagcgagtagatagcaagcaaggtaccatcgactctgaccccgagttcatggccttc
ctcgaggctctcgcgaatccagatgctgtcaaggaaacccgtcctgagcttgagacaagt
gccgaggaggctgccaagaatgcagtggtcactacgacgccgcttatcgaatatcttaag
gagaagcgagcggccaaagcaaaggaactcgctgcagcgaagagcgccgccaaacatgct
cgtcaggagtcgcagaatacaaagggcaagggcgctgctgcggcggatgattccaagaag
aagtcgaaggatgggaggggcgacagagacagagacagagacagagatcgtgacagggat
agggatagggatagggatcgcgacagagagtcggagaggaaacctaaagagtcggtcaag
attctcacaaagaaggctgcgtccgaggccgcgaacaagaaagctgttgccgctgctgaa
gccgctgctgaggctgccaaagcagctgccgcgcaactccaacaggcttcgcagcagaat
gagaagcccagtgcgacagagcctctgcccaagaatcgcaaagctggaatcgccaacgcg
gcacgcatcttacagcgcgatcttggtcttgctccagctaaatctgctcgaaaggcccgc
caagaagccgctaagtccgaagcagagagcaagtcgactccgtcaccgaaacagggcaag
gaggtatcctcgaaggaggcgacgccggcctctccagctccggctgcgacacatacccct
ccatctgctcagccctcgtcatcaccaacgcatgaaaaaggaccgtcgtccacacctgca
ggcaaaggccgcggcaagaagcgcggtggtggtcctggcgggggtgacgatgacaacaaa
cctaagacgaacccgaagaaagacaataagggggagaagtctagcgaacaggtaccacca
aaaccgaccatgattctcaaaaagaacaaggattctcagcatcaacagcaacagaatact
tccccatcacaggctcaaccacaacactcaacaaaccaacctcagcagcaacagcagcaa
cgcccttctacacaagccaacaaaccccaatccccgaacaaccccaaaaataccggcggc
gggggcggcggtggtcaaaacccaaaaaagaacgaaaaacagaatcaaacagccaaccag
aatgccaaccccccctcccagcagtcatcaaccccaactcctggcgcaacccgcgctttc
attaagcacgcccccgcctcgcaaggcgtaaccgacgttctcctgcgcgaagccctctcc
gccttcggcaccgtcacatcagtcgagatcgccgaccgcaagaagggcttcgcctatgtc
gattttgcggagccctccggcctagcgaaagccatggccgcaagtccggttgctgtggcg
caggcgatggtgacggtgttggagaggagggagatggcggggaagaagggtaagggggaa
agggagaaagagggggggaagaaggatgggcaggggcatggaaaggacaaaggggagagg
gagagggaaaagaaggggcgggatcagaagggggagaataatgaagaggagaaggagaag
gagagggagaaggagaaggagaaagagaaggagaaagagaaggagaaagagaaggagaaa
gagaaggagaaagagaaggagaagcagaagcagaaggaaaacaaagctgttgtggctgcg
gcggggggggaaggccaacagcagcagggtcaagctcaaggacagggtcagggacagcat
aagcgcggcggtcggcgtcgtggtggtaggggaagagagaaggatggtaaggagggaggt
aaagaaggtggtggtgagggtaaggagtctgggggtagaggtggcagcggtcatcatggt
gggaaagatgggtctgggaagaaaggaggtgctgagggggctgctgctaagggagcaccg
gctgataacagttcgtag
DBGET
integrated database retrieval system