Thermochaetoides thermophila: CTHT_0008420
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Entry
CTHT_0008420 CDS
T03100
Name
(RefSeq) hypothetical protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cthr
Thermochaetoides thermophila
Pathway
cthr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cthr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CTHT_0008420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cthr03021
]
CTHT_0008420
03019 Messenger RNA biogenesis [BR:
cthr03019
]
CTHT_0008420
Transcription machinery [BR:
cthr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CTHT_0008420
Messenger RNA biogenesis [BR:
cthr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
CTHT_0008420
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
CFIA_Pcf11
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
18254880
NCBI-ProteinID:
XP_006691370
UniProt:
G0S018
LinkDB
All DBs
Position
Unknown
AA seq
781 aa
AA seq
DB search
MADNSAEVAEDYRQALEDLTMNSRIEIATLTNIARENANHGLAIAEVLINHIKKAPPSRT
LPALYVLDSIVKNVPTPYALYFGPKLYSIFMGAYTKVDNATRRKMDEMLKTWKEPVPGSL
STKPVFPIEQVRPIENALIAARNAAMAANQNSYQGQQQLLRGRQPVPSRDTPTPPTGRPY
PPPPQGQAPYPGPNGHQQLGAVPSNAQQPYPGHPPVSGPNPIPPRATTQPAPPVGGYAGY
QPPAGRDVYGAQPAAISIDKLKDDIQQLIVAEKAEFAQDPLDTSKQTRLKALLDLQAIIQ
SQDMPQEQLMIIRDRVAELAVNKLRPQPQPACPPVTAAAGPAVAVGAAAPVGAAHALLSP
YTGTSPTATTSPNPVVPQQPTPIPPAAVAVVAAALARQPSVPTATVPPSHPSVPPTTSGG
TGSSGGGISLDSLFGKGALATLLRMNATTPQQTTVPQQTSPPAPPLPPPPVAAPATTGIP
PSAVATIAAALQAAPTPPPAAQQSQPSSQQHPADPSRPGAPVLPQDPAALLAILRQSGLL
KPAATATPPVDTGIQLTPASLKIYRPHLIPQLLENLGPPCTQCGRRFKTDEEGRRRKTAH
MDWHFRVHQRSAEAERRGQHRSWYVDELDWIRSREAIDTEYITPAPGQDDLTSATTTLPY
HIAPFPPTGSSSTKTSTSFGPGSKVPYLPVPEDAASRAANSTCPICQEKFEMKWLDEAQE
WVWTDAIRAGPQGRVYHASCHREAAGAVSSTTTSGNNGKGVLGKRKAEDEGKKRIKTEPF
Y
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atggcagataactctgctgaagtggccgaggactatcggcaggccctggaggacctgacg
atgaactcacgcattgagattgcaaccttgaccaacattgctcgcgaaaatgcaaaccac
ggccttgcaatcgcagaggttctgatcaaccatatcaagaaggcaccaccatcgagaacc
ttgccggcactgtatgtgctggattcgatagtcaagaatgtccccaccccgtatgctctg
tacttcgggcccaaactttactcgatctttatgggtgcctacactaaagttgataatgct
actcgccgcaagatggatgagatgctcaagacatggaaagagcccgttccaggatcgctg
tcgacaaagcccgtctttcctattgaacaggttcgccctatcgagaatgccttgatcgcc
gccaggaatgcagccatggctgccaatcagaacagttatcagggtcaacaacagctgctt
cgaggtcgacagccagttcccagcagggacacaccaacgccaccaactggcagaccctac
cccccacctcctcaggggcaggccccctatcctggtcccaatggccaccaacagctgggc
gcagtgccttctaatgcccagcagccgtatccaggccatcctcccgtcagcggacccaac
ccaattcctccgcgtgcaacaacacaaccggctcctccagttgggggttatgctggatac
caaccgccggcggggcgggatgtctatggcgcccagccagcagccataagcatagacaag
ttgaaagatgatatccagcaacttattgttgcggaaaaggcggagtttgcacaggatcca
cttgatactagtaaacagacaagactgaaggcattgctggacctgcaagcaattatccag
agccaagacatgcctcaggagcagttgatgatcataagagatcgagttgctgaacttgcc
gtaaacaaactgcgcccacagccgcagccagcgtgtcctccagtcactgctgctgctgga
ccggccgttgctgttggtgctgctgctccagttggagctgcccatgctcttttgtcgcca
tataccggcacttctcctaccgcaactacttcaccaaacccagttgtgcctcaacaacca
actcccattccgccggcagcagttgctgtggtcgcagcagctctggctcggcaaccttcc
gtaccaacggcgacagtaccaccctctcacccttccgttcctccaacaacatcaggaggg
acaggcagtagcggcggcggtatatctcttgattctctatttggcaagggtgctttggcc
accctcttgcgtatgaacgccacgacacctcaacaaacaacagtgccacagcaaacatca
ccacctgctcctcctcttcctcctcctcctgttgctgctcctgctacgactggtattccg
ccctcggcggttgcaacgatagcggcggctctccaagctgcaccaacaccacctccggct
gcacagcagtcacagccttcatcgcaacaacatccagctgatccttccaggccaggagcc
cctgttctgccccaggatcccgccgcattgctggccattcttagacagtctggactgctc
aaaccggcagcgacggcgacccctccagttgatactggtatccaattgactcctgcttca
ctgaaaatctaccgcccgcatcttattcctcaacttctcgaaaaccttggtcctccatgt
acacaatgcggcaggaggttcaagacagatgaagagggccggcgtaggaagacagcgcac
atggattggcacttccgggtgcaccagcgcagcgccgaagcagagagaagaggccagcat
cgaagctggtacgtcgatgagctggattggatccgttctcgggaggctatcgacaccgag
tacatcactccagccccaggccaagacgacctcacttcggccacaactactcttccgtat
cacattgcaccgttccctccgacgggctcgtcgtctacaaagacttctacatcctttgga
cccggcagcaaagtgccttacctccctgtccccgaagatgctgcctcccgcgcagcaaac
agtacatgcccaatctgccaggaaaagttcgaaatgaagtggctcgacgaggcccaggaa
tgggtctggaccgatgccatccgtgctggaccccaggggagggtatatcatgctagctgt
caccgcgaagcggcaggggctgtctcatcaacgactaccagtggcaacaatggcaagggc
gttttggggaagcggaaggcagaagatgaggggaagaaaaggatcaagacagagcctttt
tactaa
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