KEGG   Thermochaetoides thermophila: CTHT_0069830
Entry
CTHT_0069830      CDS       T03100                                 
Name
(RefSeq) DNA ligase-like protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
cthr  Thermochaetoides thermophila
Pathway
cthr03030  DNA replication
cthr03410  Base excision repair
cthr03420  Nucleotide excision repair
cthr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cthr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CTHT_0069830
   03410 Base excision repair
    CTHT_0069830
   03420 Nucleotide excision repair
    CTHT_0069830
   03430 Mismatch repair
    CTHT_0069830
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cthr03032]
    CTHT_0069830
   03400 DNA repair and recombination proteins [BR:cthr03400]
    CTHT_0069830
Enzymes [BR:cthr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CTHT_0069830
    6.5.1.6  DNA ligase (ATP or NAD+)
     CTHT_0069830
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     CTHT_0069830
DNA replication proteins [BR:cthr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    CTHT_0069830
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     CTHT_0069830
DNA repair and recombination proteins [BR:cthr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     CTHT_0069830
   NER (nucleotide excision repair)
    Other NER factors
     CTHT_0069830
   MMR (mismatch excision repair)
    Other MMR factors
     CTHT_0069830
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-GeneID: 18261021
NCBI-ProteinID: XP_006697261
UniProt: G0SHF4
LinkDB
Position
Unknown
AA seq 863 aa
MAPKQATLGQFFGQANGTKSKPAPMQQTKLSFATKAKTEEKNDKAKREDDVEDVQPEEDA
GGKSPEPKKKRGRPAKSAVAQKDANGVEDEEGESAAPVTKRPRKGRRVVKDDEEDEIMED
VLSESDAKQEAKKPPVSAPEPALIKKSEVEERTPESESEVEEAEEELQDEEEKPDVAAKV
RQKIQATLKSNVKHPYPDWKEGEPVPYAALCQTFSLIELTSKRLEIMAHCSLFLRQVMRL
TPDDLLPTVLLMVNKLAPDYAGIELGIGESLIMKAIGETTGRSLSVIKQDQKEIGDLGLV
AVKSRATQPTMFKPKPLTVRGVHKILMDIATVTGNGAQQKKVDFIKKLLSASDVNMKGKA
DITKDKGGPSEAKFLVRFLEGKLRLGLAEKTVIVSLAQAMVAHEAWKKGKVPSTADLEKG
EQILKQVYSELPSYDVIIPAMVKHGIFNLREHCKLRPGVPLKPMLAKPTKAITEVLDRFE
GQTFTCEYKYDGERAQIHYVAKDTGEALSQSASGASKEVGKGVAAIFSRNSEDLSKKYPD
VLAKLPTWVKEDTKSFVLDCESVAWDVNEKKVLPFQTLMTRKKKDVKVEDVKVKVCVFAF
DLLYLNGEAIVHKSLRERRELMYKAFQPVEGEFAFATHMNSQELEDIQAFLDESVKASCE
GLMVKMLDGEESGYEPSKRSRNWLKIKKDYLSGVGDSLDLVVLGAYYGKGKRTSVYGAFL
LACYNPIKETYETVCNIGTGFSDSVLEELYKQLSEIVIDRPKPFYSHSSTAQHQPDVWFE
PRYVWEVKTADLTLSPRYKAGMYEGVDPSGEKGISLRFPRFIKVRDDKKPDEATSSRQVA
EMYRKQESVAKSKGPAVDDDWEY
NT seq 2592 nt   +upstreamnt  +downstreamnt
atggcgccgaaacaggcaactttaggccaattttttggccaggcgaatgggacgaagagc
aagccagcgccgatgcagcagacaaaattgagcttcgcgaccaaggcgaagacagaagag
aagaatgataaagcaaaacgagaggatgatgttgaggatgttcaacctgaagaagacgcg
ggcggaaaatctccagaacccaagaaaaagcgggggcgcccagcgaagtcagcggttgcc
caaaaggatgccaatggggtcgaagatgaagagggagaaagcgcagctccggtaacaaag
cgtccacggaagggcaggcgggtagttaaagatgacgaagaagatgagatcatggaagat
gtgctgtctgaatcggatgccaaacaggaggcaaagaaaccccctgtgtcggcccctgaa
cccgcgctaatcaaaaagtcagaggttgaggagcggactcccgagtcagaatcagaagtc
gaagaggcagaggaagagctgcaggatgaggaagagaagcctgatgttgcggcaaaggtg
cggcaaaagatccaggccactctcaagtcgaatgtcaaacacccgtatccggactggaag
gagggcgagccggtgccatatgcggccctctgccagacattctcgctcatcgagcttacc
tccaagcggttggagatcatggcgcactgctccttgttcctcagacaagtcatgcggctt
acccctgacgaccttctgcctactgtcttgctcatggtcaacaagctcgcccctgactat
gccggtattgagttgggcattggcgagtcgctgatcatgaaggccatcggcgagacgaca
ggccgcagtctctcagttatcaagcaggatcaaaaggagattggtgaccttggtctcgtg
gctgtcaagtcaagggcaacgcaaccaaccatgttcaagccgaagcctcttactgtccgg
ggcgtccataagattcttatggacattgccaccgtcacaggtaacggcgcgcagcagaag
aaggttgatttcatcaagaagttgctttcggcttcggacgtgaatatgaagggcaaagcc
gacattaccaaggacaaaggtggcccaagtgaagccaagttcctcgttcgtttccttgag
ggcaagctgagactcggtctcgctgaaaagactgtcatcgtctcacttgcccaagcgatg
gtggcccatgaggcatggaagaaaggcaaggtgcctagcacagctgacttggagaagggc
gagcagattctcaagcaggtctacagtgaattgccgagctacgatgttatcatccctgcg
atggtcaagcatggcatcttcaacctgcgggagcactgcaagctacgacccggcgttccc
cttaagcccatgctggccaaacctactaaggctatcactgaagtgctggatcgcttcgaa
gggcagaccttcacttgcgagtacaagtatgatggtgagagggcccagattcactatgtc
gccaaggataccggggaggcccttagccaatcggcctcgggcgcttctaaggaggttggc
aagggtgtggcggccattttctctagaaactcggaagacctgtccaagaagtacccggac
gtcctggccaagctgccaacatgggtcaaggaggacaccaagagtttcgtgctcgactgc
gagtcggtagcctgggatgtcaatgaaaagaaggtgttgccgtttcaaacgctcatgacc
cgcaagaagaaggatgttaaggttgaagatgtcaaggtcaaggtctgcgtctttgcattc
gacctgctctacttgaatggcgaagccattgtgcataagtcactgcgggaacgccgcgag
cttatgtacaaggcgttccagcccgttgaaggcgagtttgccttcgccacgcacatgaac
agtcaggagctggaagacattcaggcattcctggatgagtcggtcaaggcgtcgtgtgaa
ggcttaatggttaagatgttggacggagaggaaagtggatatgagcctagcaagcgcagt
cgcaattggctcaagattaaaaaggactacctctcgggcgtgggtgactcgctcgacctt
gttgttttgggcgcttactacggcaagggcaagcgcacctccgtctacggtgcgttctta
ctggcctgctacaatcccatcaaagagacctacgaaactgtgtgcaacattggcacgggt
ttcagcgactccgttctcgaggagctgtataagcagctctctgagattgtcattgaccgc
cccaagcctttctattctcacagctcgactgcccagcatcagcctgacgtgtggttcgag
cctcgctatgtctgggaagtcaagaccgccgaccttactctcagcccgcgctacaaggcg
ggcatgtatgaaggtgtcgacccgagcggcgagaagggtatcagtttgcggttcccgcgc
tttatcaaggtccgcgatgataagaagcccgatgaggctacttcaagcaggcaggttgcg
gaaatgtatcggaagcaggagagcgttgcgaagagtaaaggacctgcggtggatgatgac
tgggagtattaa

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