Crotalus tigris (Tiger rattlesnake): 120298215
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Entry
120298215 CDS
T08476
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Pathway
ctig03013
Nucleocytoplasmic transport
ctig03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120298215 (UPF1)
03015 mRNA surveillance pathway
120298215 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctig03019
]
120298215 (UPF1)
Enzymes [BR:
ctig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
120298215 (UPF1)
5.6.2.5 RNA 5'-3' helicase
120298215 (UPF1)
Messenger RNA biogenesis [BR:
ctig03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120298215 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
120298215 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
120298215
NCBI-ProteinID:
XP_039177660
LinkDB
All DBs
Position
Unknown
AA seq
1139 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGGSGSGGSVAA
PGTPGLPGGGVGPGAGGPPSVVVPGQLDAQVNGPDGILQNGAVDDNVPKTSQLLAELNFE
EDQEDTYYTKDLPVHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCK
EVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDS
SQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVD
EEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFT
LPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDIFVDYGDEIAIELRSSVGAPV
EVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRF
TAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS
NIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDE
TGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATE
PECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYR
MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTS
YLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEI
ASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQP
LWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIP
GSVYDRSSQGRPSNMYFQTHDQIGMISAGPSHVTTMNIPIPFNLVMPPMPPPGYFGQANG
PAAGGMFAGRGNLKGKAGRGGRQKNRFGIPGAGQSNLPNSQASQDVVSQPFSQGPLTQGY
ISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGVTGLSQY
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaagcgtacgggcccagctcgcagacgttgactttcctcgacaccgaggag
gccgagctgctgggcgctgacacgcaaggctccgagttcgagttcaccgacttcaccttg
cccagccagactcaaacgccgcccgggggaggctccggtagcggcggaagcgtcgccgcg
ccgggcaccccgggactcccggggggtggcgtcggaccaggcgcgggggggccgccttcc
gtcgtcgtgccggggcagctggacgcccaggtaaatggaccagatggcatcctccagaat
ggggcagtggatgataatgtgcctaaaaccagccaacttcttgcagagctcaattttgaa
gaagaccaggaagacacttactacaccaaggaccttcctgtacatgcctgcagctattgt
ggcatccacgacccagcttgcgttgtctattgtaacaccagcaagaagtggttttgcaac
ggacgtgggaatacttctggcagccacattgtgaaccatcttgtaagagccaagtgcaaa
gaagtgactcttcataaggatggtcctttgggcgagactgtcttggaatgttacaattgt
ggctgtcgtaatgtgtttcttcttggcttcatcccggccaaagctgactctgtggttgtt
ttgttatgcaggcagccttgtgccagccagagcagcttaaaggacatcaattgggacagc
tcacagtggcagcctttgattcaagatcgctgcttcctttcttggttagtcaaaattcct
tcagaacaggaacaactgagggcccggcagatcacagctcagcaaattaacaaactagaa
gaactctggaaggagaacccatctgccactttggaggacctggaaaagcctggtgttgat
gaagagccacagcatgtcctccttagatatgaagatgcttatcaataccagaacatcttt
ggtcctctggtcaagcttgaagcagactatgacaagaaattgaaggaatctcagactcaa
gacaacattactgtgagatgggatcttggtttgaacaagaaaaggattgcctacttcacc
ttgccaaagacagattcagatatgcgtttgatgcaaggggatgagatttgcctgagatac
aaaggggatctggcaccactgtggaaaggaattggccatgtgattaaagttcctgacatt
tttgtagattatggtgatgaaattgcaattgagttgagaagtagtgtcggcgctcccgtg
gaagtgactcacaatttccaagtggattttgtatggaaatcaacatcctttgatagaatg
cagagtgccctaaaaacatttgctgtggatgaaacatccgtttctggctacatctatcac
aaacttctgggtcacgaagtggaagatgtcattattaaatgtcagttgccaaagcgcttc
acagcacaaggacttccggacctcaaccattctcaggtgtatgcagtgaaaactgttttg
cagcgccccttgagtcttatccagggcccccctggcacaggcaagactgtgacatcagcc
acaattgtgtatcacctggcaaggcaaggaaatgggcctgtgctggtttgtgccccaagt
aacattgctgtggaccagttgacagaaaaaatacatcagacggggctgaaggtggtgcgc
ctgtgtgcaaagagccgcgaggccattgattcacctgtctctttcttagcactgcataac
cagatcaggaatatggatagcatgccagagctccagaaactgcagcaactgaaagatgag
actggggaactgtcatccgctgatgagaagcgctaccgagcacttaaacgaacagctgag
cgggaattgctaatgaatgcagatgtcatttgctgcacctgcgtcggagctggtgaccca
agacttgcaaaaatgcagtttcgttccattttgattgatgaaagcacacaggccactgag
ccagagtgcatggtgcctgttgttcttggggcaaaacagttgatccttgtgggcgatcat
tgccagctgggccctgtcgtgatgtgcaagaaggccgcgaaagcaggtctgtcgcagtcc
ctctttgagcgactggtggtgctgggcattcggcccatccgcctgcaagtccagtaccgc
atgcacccggccctgagtgcttttccctccaacatcttttatgaagggtccctccagaat
ggtgtcactgcagcagaccgcgtcaagaaggggtttgacttccagtggcctcagccagac
aagcccatgtttttctacgtgacccaagggcaagaagaaattgcaagttctggcacttct
tatttgaacagaacagaggcagccaatgtggagaaaataaccactaagctactcaaggct
ggtgcaaagccagatcagattggcatcatcacaccttatgagggccagcgttcatacttg
gtgcagtacatgcagtttagtgggtctttgcatactaagctttatcaggaagttgaaatc
gctagtgttgatgctttccaagggcgagagaaggacttcattatcctctcctgtgttaga
gccaatgaacatcaaggcattggctttctgaatgacccccggcgtctcaatgtggcgcta
acaagagcaagatacggggtcattattgttgggaatccaaaggccctctccaagcaacct
ctttggaatcacctcctgaattactacaaggagcaaaaggtcctggtggaggggcccttg
aacaatctccgcgagagcctcatgcagttcagtaagcctcgaaaattggtcaacactatc
aacccgggagcccggtttatgacaactgctatgtatgatgcccgtgaagctattatccct
ggatcagtttatgatcgcagcagccaaggccggccatccaacatgtatttccaaacacac
gatcagattgggatgatcagtgctgggcccagccatgtcaccaccatgaacattcctatc
ccattcaacttggtgatgcctcccatgcctccaccagggtactttggacaggccaatgga
ccagctgcaggtgggatgtttgcaggacgcggaaacctgaaaggcaaagctggccgtggt
gggcgacagaagaaccggtttggcatcccaggggctggccagtcgaacctgcccaacagc
caggccagccaggacgtggtctcccagcccttctcccagggccccctgacccagggctac
atctccatgagccagccctcccagatgagccagcctggcctctcccagccagaactgtca
caggatagttaccttggtgatgagtttaaatctcagattgacgtggccctgtcgcaggat
tccacttaccagggggaacgtgcatatcaacatggagtgacggggctgtcacagtattag
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integrated database retrieval system
