Crotalus tigris (Tiger rattlesnake): 120300346
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Entry
120300346 CDS
T08476
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Pathway
ctig03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
120300346 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ctig03400
]
120300346 (LIG4)
Enzymes [BR:
ctig01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
120300346 (LIG4)
DNA repair and recombination proteins [BR:
ctig03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
120300346 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
BRCT_2
DNA_ligase_IV
DNA_ligase_A_C
RNA_ligase
LIG3_BRCT
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
120300346
NCBI-ProteinID:
XP_039182149
LinkDB
All DBs
Position
Unknown
AA seq
908 aa
AA seq
DB search
MASVPISYSSSKLTVASQVPFADLCSTLEQIQKCKSRSDKTRYFKDFLDSWRKFHDALHK
NEKDVIDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDALKLLNFRTP
IGSQGNVGDFAMIAYFVLKSRCINQGQLTIQQVNDLLDSISNNNAAKRKDLVKKSLLQLI
TQSSALEQKWLIRMIIKDLKLGVSQKTLFSIFHSDAAELHSVTTDLEKVCRQLHNPSVSL
IDSSITLFSAFKPMLASIASVHQIEKQMNNQIFYIETKLDGERIQMHKDGDVYKYFSRNG
YDYTQQFGASPLEGSLTPFIHQAFRNIQNCILDGEMMAYNPTTQTFMQKGSKFDIKRMVD
DSELQTCFCVFDVLMVNDQKLGHEMLSKRCNILNTVFIPIPGRIQIVSRIQANTQKEVVD
ALNEAIDNREEGIVIKDPISIYKPDKRGEGWLKIKPEYVSGLMDELDLLIIGGYWGKGLR
GGIISHFLCAVAEAPLPGERPSKFHSICRVGSGCTMRELYDLGLKLATYWKKYDRKVPPC
NILCGAEKPQVFIDPCNSVIVQIKAAEIVSSDMYKTECTLRFPRIERIRDDKEWYECMTV
DFLEQLRSKAAGKLATKHLDIVEDEPQEKKRKTVAKIKKAVGLMDHFKAPDLSKINKVSN
VFEDVEFCIMTGTQHYSKYALESKVAEYGGSIVQNPGPDTYCVVAGTENVRVKNIISSNN
YDVVRAEWLLQCFQAGKFVPWQPTFMIHMSPETKQHFACEYDTYGDSFTADTDPLELKAV
FSRINTSEEIFQDVIANLEARYSWESSLSIFRQQTIYLSLSDEMSYLRDRINQTRCLTVE
LILRFHGAKVVSQLEEGVSHVISGDHSDLKKIKTIRRTFKKKFKIVSEQWIKDSVKAGEL
QNENLYMM
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atggcttcagtccccatttcatattcatcttccaagctaactgtagcatcacaagtccca
tttgcagatctctgttcaacattagaacaaatacagaagtgcaaatcccgatcagataaa
acaagatatttcaaggattttctagattcctggaggaaatttcatgatgctcttcataaa
aatgagaaggatgtgatagattctttttatcctgcaatgaggcttattcttccacagttg
gaaagagagaggatggcttatggaattaaagaaacaatgcttgctaagctatatattgaa
ttgctaaatttacccaaagatggaaaagacgctttaaaacttttaaattttcgaacaccc
attggctcacaaggaaatgttggagactttgctatgattgcctactttgttttgaaatca
agatgcatcaaccaaggtcaactgaccatacaacaagtgaatgatcttctagattcaatt
tctaataataatgctgccaaaaggaaggatctagttaagaagagccttcttcagttaata
actcagagctcagcactagaacagaaatggttgattaggatgatcataaaggatttgaaa
cttggtgtcagccagaaaaccttattttctattttccattctgatgctgcagaattgcac
agtgtcacaacagatttggaaaaggtttgtaggcagctgcataatccttcagtatcactt
attgattcttctattacattattttctgcctttaaaccaatgcttgcttctattgccagt
gtgcaccaaattgagaaacaaatgaataatcagattttttatatagaaaccaaattagat
ggtgaacgaatacagatgcataaagatggagatgtttacaaatacttttccagaaacggg
tatgattatactcagcagtttggtgcttctccccttgaaggttcattgactcctttcatt
catcaggcctttagaaatattcaaaactgcattctggatggtgaaatgatggcctataat
cctaccacccagacttttatgcagaaaggaagcaagtttgacatcaaaaggatggtggat
gattctgaattacaaacatgcttctgtgtatttgatgttcttatggtcaatgatcaaaag
ttgggtcatgaaatgctgagcaaaaggtgcaatatattaaatacagtttttataccaata
cctggtcgaatacagattgtttctagaattcaagcaaacacacagaaagaagtagtagat
gccctgaatgaagccattgataacagagaagaaggaattgtaataaaggaccccatatca
atttacaagccagataagcgtggggaaggatggctaaagatcaagccagaatatgtcagt
gggttgatggacgaactggatcttttaattattggtggctactggggcaaaggtcttcgt
ggtggcataatatctcattttttatgtgcggttgctgaggctcctttgcccggtgaaaga
ccatctaaattccattccatttgccgtgttggttccggttgcaccatgagagaattgtat
gatcttggcttgaaattagccacatattggaaaaaatacgataggaaggttcccccttgt
aatatcttatgtggtgctgagaagcctcaagtctttattgatccttgtaattcagtgatt
gtccagattaaagctgctgagattgtgagtagtgatatgtataaaacagaatgcacatta
cgctttccacgcattgaaagaataagggacgataaagaatggtatgaatgtatgactgtt
gactttctagaacaactcagaagtaaagctgctgggaagcttgcaacaaaacaccttgat
atagttgaggatgaaccacaagaaaagaagcgtaaaacagttgcaaaaattaaaaaagca
gtcggtttaatggatcattttaaagcacccgacctttctaaaataaacaaagtttctaat
gtttttgaagatgttgagttttgtattatgactgggacacaacattattcaaagtatgct
ttggaaagcaaagtagcagaatatggtggcagcatagttcaaaatcctgggcctgatact
tattgtgttgtagcagggactgagaatgttagagtgaaaaatattatttcttccaataat
tatgatgttgtgagagcagaatggcttttacagtgtttccaggctggaaaatttgtgcca
tggcagcctacttttatgattcacatgtctcctgaaacaaagcaacattttgcttgtgaa
tatgatacttatggtgatagtttcacagctgatactgatccactagagttgaaggcagtg
ttctcaagaattaatacctctgaagagatttttcaggatgtgattgctaacctagaagcc
cgttattcttgggaaagttccttaagcatattcaggcaacaaaccatttacctgagcctt
tctgatgaaatgagctatttaagagacaggataaatcaaaccagatgtttaaccgtagag
ttgatacttcgctttcatggagcaaaagtagtgtcacagcttgaggaaggtgtatcccat
gtaatcagcggagatcattctgatttgaagaaaataaaaaccattagaaggacatttaag
aaaaagtttaaaattgtgtcggagcaatggataaaagattctgtaaaagctggagaatta
caaaatgaaaacttgtacatgatgtaa
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