Crotalus tigris (Tiger rattlesnake): 120309760
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Entry
120309760 CDS
T08476
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Pathway
ctig03030
DNA replication
ctig03410
Base excision repair
ctig03420
Nucleotide excision repair
ctig03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120309760 (LIG1)
03410 Base excision repair
120309760 (LIG1)
03420 Nucleotide excision repair
120309760 (LIG1)
03430 Mismatch repair
120309760 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ctig03032
]
120309760 (LIG1)
03400 DNA repair and recombination proteins [BR:
ctig03400
]
120309760 (LIG1)
Enzymes [BR:
ctig01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
120309760 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
120309760 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
120309760 (LIG1)
DNA replication proteins [BR:
ctig03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
120309760 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
120309760 (LIG1)
DNA repair and recombination proteins [BR:
ctig03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
120309760 (LIG1)
NER (nucleotide excision repair)
Other NER factors
120309760 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
120309760 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
Motif
Other DBs
NCBI-GeneID:
120309760
NCBI-ProteinID:
XP_039203229
LinkDB
All DBs
Position
Unknown
AA seq
909 aa
AA seq
DB search
MQSNIRSFFQPLARIKSEKEKAEDSHMEDVLISQKKLINGSEFGEDFPVNSASKKVAKVL
KSDDEEDSVELVGKDAQADDNKLSPDCVSEQKISEESISPSTSPTTTSSTISFNIPRRKT
ARKQLSKRKPQEEDNSYNFHESRSTKRWKEDLDRDDSKDKTNEKPMEVEEVKSENEKLVQ
YKTDKNAKEKEISDSSKPSRKSISSFFAPKKSSVNIEKQTTVVSENMAVHKCLNKVNNDE
SNSMADNFLKPSFTLEPAEYNPTKSTYHPVHNACWGPGQKIPYMAVARTFEYIEEESARL
KIIETLSNLFRSAIVLSPQDLLPCVYLCLNRLGPAYEGLELGIGKTILMKALAQATGRQL
DQIKAEATEKGDLGLVAENSRTTQGTVFAPPKLGAAAVFGKLQAIGHMAGSSSMNKKIDI
IKSLFVACRHSEARYVARSLEGKLRIGLAEQSVLSALAQAASLTPPGQKFPPDVLDAAKG
KSADARKAWLDERALIVKQAFCELPNYDIIVPVLLEHGVESLPQYCKITPGIPLKPMLAH
PTKGIGEVLKRFEEAAFTCEYKYDGERAQIHILENGEVHIYSRNQENNTTKYPDIVSRIP
KVKNSTVKSCILDAEAVAWDPVAKQILPFQVLTTRKRKDVDAAEIQVQVCIYAFDMLYLN
GTSLVQKPLSQRRTLLHNSFTEVEGQFLFATSMDTSNVDEIAEFLERSIKDSCEGLMVKT
LEVDATYEIAKRSHNWLKLKKDYLEGVGDTLDLVVIGAYLGKGKRAGTYGGFLLACYDEE
SEEFQSICKIGTGFSDEDLEKLHSSLKDYVIPQPRPYYRWGGTAEPDHWLEAQHVWEVKC
ADLSISPIHRAASGLVDEEKGISLRFPRFLRIREDKKPEEATNSAQVAELYRKQQQIQNQ
PPLEKDDFY
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atgcagagcaacataagatcattcttccagcctctggcacgaataaagtctgaaaaagaa
aaagcagaagacagccacatggaagatgtgcttatttcacaaaagaaattaataaatggt
tcagaattcggtgaagacttcccggtgaattctgcatcaaaaaaagttgctaaggtcctt
aagagtgatgatgaagaagattctgtggaattagttggaaaggatgcacaagcagatgac
aacaagttgagccctgactgtgtttctgagcaaaagatctctgaagagagcatctctcca
agtaccagcccaactaccaccagttcaaccatatctttcaatatcccaaggcgcaaaact
gcccgcaagcaactttctaaacgtaaaccacaggaagaagacaacagttataatttccat
gaaagccgcagtaccaaacgatggaaggaagaccttgatagagatgattctaaagataaa
actaatgagaaacccatggaagtggaagaagtgaaaagtgaaaatgaaaaattggtgcag
tataaaacagacaaaaatgcaaaggaaaaagaaatctcagattcctctaagccatccaga
aagtctatttctagtttttttgctcccaagaaaagttctgtgaatatagaaaagcaaaca
actgtagtatcagaaaacatggcagtacataagtgtcttaataaagttaataatgatgag
tccaacagcatggctgacaattttctcaagccatcatttacacttgagcctgcagaatac
aatcctacaaagagcacttatcatcctgttcataatgcttgctggggccctggccaaaag
ataccatacatggctgtggctcgtacttttgaatatattgaggaagaatctgctcggttg
aaaattatagagaccctaagcaatctctttcgttctgcgattgtcctatctccacaagac
ctgcttccctgtgtctatctctgtctcaatcggttaggcccagcatatgagggcctagaa
ttaggcattggcaaaaccatcctcatgaaagctctggcccaggccacaggtcgccaattg
gaccaaatcaaggcagaggcaacagagaagggagatctaggtttagttgctgaaaacagt
cgcacaacacaaggaactgtgtttgctccacccaaacttggtgctgctgctgtctttggc
aaactgcaagcaattggtcatatggcaggaagctcgtctatgaacaagaaaattgacatt
atcaaatctttgtttgttgcatgtcgccattcagaggctcgttatgtggctcggtccctt
gaaggaaagttacggattgggctagcagagcagtctgtcctctcagctcttgcccaggca
gcatcactcactcctccaggacaaaaatttcccccagatgttttggatgctgcaaagggc
aaatcagcagatgcacgcaaagcttggctggatgaaagggccttgattgttaagcaggcc
ttctgtgaactaccaaattatgacatcatagtacctgtccttttggagcatggtgtggag
agcttgcctcagtactgcaagatcaccccagggattcccctgaagcccatgctggctcac
ccaaccaaaggaattggggaggtattaaagcgttttgaagaagcagcttttacttgtgaa
tacaaatatgatggggagcgggcacagatccatattctagagaatggagaagtacatatt
tatagtcgaaaccaagaaaacaacacaacaaaataccctgatattgtctcccgtattccc
aaggtgaaaaacagcactgtgaaatcatgtattttggatgcagaggcagtggcctgggac
cctgttgcaaaacagatccttccattccaagtattgaccacccgcaagcgcaaggatgtg
gacgctgcagaaatccaagtgcaagtttgtatatatgcatttgacatgctctaccttaat
ggaacgtctttagtccagaaacctctgtctcagcgccggaccttactgcataattctttc
actgaagttgaaggccaattcctttttgccacttccatggatactagtaatgttgatgag
atagcagaattcctggaacgctctatcaaagactcatgtgaagggttaatggtgaaaaca
ctggaagtggatgccacatatgaaattgcaaagaggtcacacaattggctgaagcttaaa
aaagattatctggaaggtgttggtgatacccttgacctggtggtgattggtgcctacttg
ggcaagggcaaacgggcaggcacgtatggaggtttccttctagcatgttatgatgaggaa
agtgaagaattccaaagcatctgcaaaattggcactggattctcggatgaggacttagag
aaacttcatagctcactcaaggactatgtgattccacagccacgaccatactatcgttgg
ggtggaacagctgaacctgatcactggttggaagcccagcatgtttgggaagtgaagtgt
gctgatttatccatttctcccatccacagggcagcatcaggtttggtggatgaagaaaag
ggcatctccttacgttttcccagattcctgcgcatccgagaggataagaaaccagaggaa
gccactaacagtgctcaggtggctgaactttatcggaaacagcagcagatccaaaatcaa
ccaccactggaaaaagatgatttctactaa
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