Crotalus tigris (Tiger rattlesnake): 120310581
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Entry
120310581 CDS
T08476
Symbol
UPF3A
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Pathway
ctig03013
Nucleocytoplasmic transport
ctig03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120310581 (UPF3A)
03015 mRNA surveillance pathway
120310581 (UPF3A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctig03019
]
120310581 (UPF3A)
Messenger RNA biogenesis [BR:
ctig03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120310581 (UPF3A)
mRNA cycle factors
P-body specific factors
120310581 (UPF3A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
120310581
NCBI-ProteinID:
XP_039205062
LinkDB
All DBs
Position
Unknown
AA seq
485 aa
AA seq
DB search
MVCFVCLEQIGPSFQILMRTEATSTAIMIIILVLCLMYHRDANMGKEVAIQVGLMQCHSL
QERTVVIRRLPPNFTKEQLEEQLHPLPAHDYFEFCSSDPSLFPHLYSRAYINFRNPDDIL
LFRDRFDGYVFIDNKGLEYPAVVEFAPFQKISKKKLKKKDAKSGSIEDDPEYRKFLESYC
AEEEKICANPETLLGEIEAKTRELIARRTTPLLEYIKNRKLEKQRIREEKREERRRRESE
KKRLREDEKRKRREEERRKRKEAEKQKKIAEKEIRIKLLKKPEKGDEQITEKHREKEKCD
IEDNKWEKSPGHGSLKSKPLEISLKELKEKSQNDSDKEQRDSERRFREKEPERQRYRLED
GRKHRTHYEFDKYVRRNEDEPKWEKGYSQDRGKKVNYNYSFTVDTVDKLGKEDKCDDMAS
KKERIRNKDRPAMQLYQPGIRIRTHMGPTSRFYDCAETISQEVYDRRYEADNSAGGGSEK
SEDAE
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggtctgctttgtctgcctggagcaaataggaccctcctttcaaatcctcatgaggaca
gaagcaaccagtacagccatcatgatcatcatccttgtcctttgcctcatgtaccatcgg
gacgctaatatgggaaaagaggtggccattcaagtgggattaatgcagtgccactcactt
caagaaagaacggtagttatacgccggcttcctcctaactttactaaagagcagctagaa
gaacaactccatccacttccagctcatgattattttgaattttgttcctctgatcccagt
ctttttccccacctctactcaagagcatatattaattttagaaatcccgatgacatcctt
ctttttagagatcgctttgatggctatgtcttcattgacaataaaggtttggaatatcct
gctgttgttgaatttgcaccattccaaaagatttctaaaaagaaactaaagaagaaagat
gcaaaatctggaagcatagaagatgatccagaatatagaaaatttttagaaagttattgt
gctgaagaagaaaaaatatgtgccaaccctgaaacgcttctgggagaaattgaggcaaaa
acaagagaactcattgctagaagaaccaccccacttttggaatatattaaaaatagaaaa
ttagaaaaacagagaattcgagaagagaaaagggaagaaagaaggagaagagaatcagaa
aaaaaacggctaagagaagatgagaaacggaaacgcagagaggaagaaagacgcaaaaga
aaagaagctgagaaacaaaagaaaattgctgaaaaagaaataagaatcaagcttcttaag
aaacctgaaaagggggatgaacagattacagaaaagcacagagaaaaagaaaaatgtgat
attgaagacaacaaatgggagaaatcaccaggacatgggagtttaaaatccaagccactg
gaaatttctctaaaggaacttaaggaaaaatcacaaaatgatagtgataaagaacaaaga
gattcagagagaagatttcgtgaaaaagaacctgagagacaaaggtatcggttggaagat
ggccgaaagcacagaactcactatgaatttgacaaatatgtgagacggaacgaagatgag
ccgaagtgggagaaagggtacagccaagaccgaggaaagaaagtgaactacaactacagc
ttcactgtggacacagtagacaaactgggtaaagaggacaagtgtgatgacatggcatcc
aaaaaggagcgcataagaaataaggatcgcccagccatgcagctgtaccaaccaggaatt
cgcattcgaacacatatgggacctacaagtaggttctatgactgtgctgaaacaatttct
caagaagtttatgacagaaggtatgaggcagacaactcagctggtggtggttctgagaag
agtgaagatgcagaataa
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