Crotalus tigris (Tiger rattlesnake): 120317378
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Entry
120317378 CDS
T08476
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Pathway
ctig03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120317378 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ctig03021
]
120317378 (PCF11)
03019 Messenger RNA biogenesis [BR:
ctig03019
]
120317378 (PCF11)
Transcription machinery [BR:
ctig03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120317378 (PCF11)
Messenger RNA biogenesis [BR:
ctig03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
120317378 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
CID
Pcf11_helical
CFIA_Pcf11
SHOCT
VHS
Motif
Other DBs
NCBI-GeneID:
120317378
NCBI-ProteinID:
XP_039219880
LinkDB
All DBs
Position
Unknown
AA seq
1717 aa
AA seq
DB search
MSGGGATTSEGAASGANTAGGNNEDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAK
DIVSLIEAQIAKAPSNEKLPVMYLMDSIVKNVGREYLAAFTKNLVSTFVNVFEKVDENTR
KSLFKLRSTWDEIFPLKILYALDVRVNSVDPAWPVKPLPPNVNTSSIHVNPKFLSKSPEE
PAVPSSTVCSLPVSCSAVSSTPIVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELEL
EQTKAQLAVSLSVQQSGSNLGQAPLKQHVPQPPHMPVKAPHPACLPPEKNHLSPLHDAKI
ANRDPRLNRMSQHSSHSKDQSHRKDFLMNAVSQPDPKTSKPPQSEKQNTTKPEKLKQNEK
LQKKEFDQVDAKLKSPSPLQNKLLHPKETRNQECENSRVSEINKRDPRLKKHLLEKPEGK
DDDIKEKRRCVERKDKEEHRSIGGRNKVINGIVQKQDPSTEESEKQSGKPGRSSTRKRSR
SPRSRSPSAHSPKRRERRSPKRRLRSLSPSGSKIGKPRQSGPKQSHLEDFGSGARDDRSS
NKRNIKQELRDSRRPKKIHEDRLQEGMNQHSSKSNSEPKENVENWPSSKSSKRWKSGWEE
NKNPQLTEEHQGLGKSPHQRHRDTWSTSKGVPSPRTPKQQHRLSVDANLQIPKELTLANK
REILKKANERLSSGEITQDDFLVLCHKIRQLFQYQEGKHRSEWDNTTGEKGISKKKPLLS
ESDLIYHEHKAKLKRTQVQHSFPRLNIMDPEEILDYQLPDGFLSAMECDQTKTKCGAQFG
ERSRRHSPIGGSRPYSDNSSHDVRRRHDEPSVSKGLREEQRINDIFKRARYEDTEKQFTD
LPGSRFGVSDGKQRFSSLIEDRAHFEDSPRHPGIRASEGPANPAPRIEAQPNLRFEGSLG
QPASQFEGPQGQAGGKGSHMFDGPPAQVAAGPLRFDGPSGQVSTGSAIRFEAPIGQPAGS
LRFEGPSGQSVGGMRFEGTHGQPSGGMRFEGPHGHATAGIRFESPHGQSSAGMRFEGMHD
QPSNNIRFDGQPSGGLRFEGPHGQPSNAIRFEGPHDRPVGPHGPPGSGMRFEGPHGQPVG
PHGQQGTGLRLEAPHMQPVGSLGQPGSNMPFDAPHGQPIGPHVQPTSGLRFEGPHGQPVG
PHGQPLGSRFEGPHNQPLGPHGQLGISPRFEPPSVQTGSGLRFEGPINQTRFDGCPSRFD
GQPGQPSILQRLDGLHVQPGSRFEMGPAQQTPPRFDSPVGQQVQPRFDTILQRFDDPPHP
ATRYDLLLGHQGPRIENVANLPGSRLETAPYGQTGPYNDAPNQPPYNGASQGMQFQRPDQ
IFDNPQGPNFNGPPVSAAQHFPNAINRTPGPFYDDKNLQGPQYRNFNNLTVGNVQPPQQV
SVLPVSSGQPFNQGQPLLPVHAQNPGGFVQNQPGNIPLSYPDNHLGQLDVNELFSKLLST
GILKSLQPDSSSSQVSEVSTQPPPEEEEEDQDQNEDIPDLTNFVIEELKQRYDSVINRLY
TGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKVTHRRWYYSLTDWIEFEEIA
DLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSVPAGPAGVDESCEICQEQFEQYWDEEE
EEWHLKNAIRVEEKIYHPSCYEDYQKTSSFDSTPSPSKTPVENPLNIMLNIVKQEGQDSC
NSPKVKDELEEKANNCTEGNTPESAEIKTEPEKVESV
NT seq
5154 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcggcggcgcgacgacgtccgagggggccgccagcggtgccaacaccgctggc
ggcaacaacgaggacgcctgccgcgactaccaatcctcgctggaagacctgacgttcaac
agcaagccgcacatcaacatgctgaccatcctggctgaggagaacgtgcccttcgccaag
gacatcgtctcgctgatcgaggcgcaaatcgccaaggctccttctaatgagaaacttcct
gttatgtacctaatggactccattgtcaagaatgttggacgagaatatcttgctgcattt
actaaaaacctagtttcaacatttgttaatgtgtttgaaaaggtggatgaaaatactagg
aaaagtttatttaaattgcgttccacgtgggatgaaattttccctctgaagattctctat
gctcttgatgttcgggtgaattcagttgaccctgcttggcctgttaagccgttaccccct
aatgtgaatacttctagcatccacgtgaatcctaagtttttaagtaaatcgcctgaggaa
cctgctgtacctagctctacagtctgttctcttcctgtgtcctgttctgctgtgtcctct
actccaattgttcctgaaatacaaaagaacttaacgcaagagcagctgataagacaacag
ctgctggcaaaacaaaaacagttgttagaacttcaacagaagaaattagaacttgaacta
gaacagacaaaagcacagctggctgtgtcccttagtgttcagcaaagtggatctaacctg
ggccaagcacctttaaaacaacatgtgccgcagccacctcacatgccagttaaagctccc
catccagcctgtctgccacctgagaaaaaccatttgtctccactccatgatgccaaaata
gccaatagagatcctcgtctcaatagaatgagtcagcactcttctcattcgaaagatcag
agtcataggaaagacttcctgatgaatgcagtcagtcagcctgacccgaagactagcaaa
cctccacaaagtgaaaagcaaaataccacaaagccagaaaaactaaaacagaacgagaag
ctgcagaagaaagagttcgatcaggtggatgcaaaattgaaatccccctctcctttgcaa
aataagctgcttcaccctaaagaaaccaggaatcaagaatgcgagaattccagagtgtcg
gaaatcaacaaaagagatcccagattaaaaaaacatcttctagagaagccagagggcaaa
gatgatgacatcaaagaaaaaagaagatgcgtggagagaaaagacaaagaggaacataga
tcaattggtggtagaaacaaagtaattaatggcattgtacaaaaacaagatcccagtaca
gaagagtcagaaaaacagagtggaaaaccaggaaggtcaagtactaggaaaaggtcacgt
tctcctagatctcgatcgccatctgcacattctccaaaacgaagagaaagaaggtcacct
aaaagaaggcttaggagtctctctccatctggatctaagattgggaaaccacgacaatct
gggcccaaacagtcgcatctagaggattttgggtcaggagcccgggatgaccgaagctct
aacaagaggaacattaagcaggaactgagggattcaaggaggccgaagaaaatccacgaa
gaccgactgcaagaaggaatgaatcaacattcttccaagtcaaattccgagcccaaagaa
aatgtggagaattggccaagttccaaatcaagcaaaaggtggaaatctggctgggaggaa
aataaaaaccctcaacttactgaagagcatcaaggacttggtaaatcccctcatcagagg
cacagggatacttggtcaactagtaaaggagttccttcacctcgcaccccaaaacagcaa
catcgattaagtgtagatgctaatttgcagatacccaaagaactgaccttggcaaacaag
agagagatccttaagaaggcaaatgaacgtctctcatctggtgaaataacacaggacgat
ttccttgtcctgtgtcataagattcgccagcttttccagtatcaggaaggaaaacataga
agtgagtgggataacacaacgggcgaaaaggggatttccaaaaagaagcccttattatct
gaatcggatttaatatatcatgaacacaaagctaagctaaaacgaacgcaagttcaacat
tcatttccgagactcaatataatggatcctgaagaaatattagactatcagttacccgat
ggatttctttctgcaatggagtgtgaccaaacaaaaaccaaatgcggtgctcagtttggc
gaaagatcaagacgacattctcccattggcggtagcagaccatactctgataattcttca
cacgatgtcaggagaagacatgatgagccaagtgtctcgaaaggtcttcgggaagagcaa
aggatcaatgacattttcaagcgggccagatacgaagatacggagaaacaattcactgac
cttccaggatcacgatttggggtctctgatgggaagcaaagatttagttcgttgattgaa
gacagagctcattttgaagattctcctagacatcctggcataagggcaagtgaagggcca
gctaatccagctcctcgaattgaagcacagcctaatttaaggtttgaaggatctctaggt
cagccagcttctcagtttgaagggcctcaaggacaagctggaggaaaaggttctcacatg
tttgatgggccaccggcacaggttgcagctggtcccttaaggtttgatggaccgtcagga
caagttagtacgggaagtgctatacggtttgaggctccaataggacaaccagcgggaagt
ttacgatttgaggggccttcaggccaatctgtggggggaatgagatttgaagggacccat
ggtcaaccctcaggaggaatgaggtttgagggacctcacggtcatgcaacggctggtatt
agattcgagagtcctcatggccagtcttctgctggaatgaggtttgaaggcatgcatgat
cagccttcaaataacataagatttgatggccagccttcaggtggattgaggtttgaaggg
cctcatggccaaccttcaaatgccataagatttgaaggacctcatgaccggccagtggga
cctcatggtccaccaggaagtggaatgagatttgagggaccacacgggcagcctgtaggg
cctcatggccaacaaggaactggtttaagattagaagccccacatatgcaaccagtggga
tccctgggacaacccggaagtaatatgccatttgatgcgccacacggacagcccattggt
ccacacgtgcagcctacaagtggtctgagatttgagggccctcatggtcaacctgtaggg
ccacatgggcaaccccttggctctaggtttgagggcccccacaatcagcctctgggccca
catgggcagctgggaatttctcccaggtttgagccaccttcagttcagactggaagtgga
cttagatttgaagggcctattaaccagacaaggtttgatggctgtccgtcaagatttgat
ggtcaacctggccagccatcaattttacaaagactggatggattacacgtacagcccggt
tcaaggtttgaaatgggtcctgctcagcaaacaccgcctcgattcgatagtccagttggt
cagcaggtccagcctcgttttgatacaatacttcagcgatttgacgatcctccacatccg
gcaacgcgatatgacctcctcctgggtcaccagggtccaagaattgaaaatgtagctaac
cttcctggctcacgattagagacggcaccgtacggacaaaccggcccttataatgacgct
cccaatcagccaccttataatggggcatcccaaggaatgcagttccagaggcctgaccaa
atattcgataacccccaaggaccaaacttcaatggcccgcccgtttctgcggcacaacac
tttcctaatgcaattaacaggaccccgggacctttttatgatgacaagaatcttcagggt
cctcagtacagaaattttaacaatctgactgttggaaacgttcagccaccacagcaggta
tctgttctgccagtatcttctggccagcctttcaatcaaggacagccactactgccggtt
catgcacaaaaccctggaggttttgttcaaaatcagccagggaatatcccactttcctac
ccggataatcatctcggacaacttgatgtgaatgagttattttcaaaactgctctctaca
ggaatccttaaatctttgcagcccgattcatcttcatcacaagtcagtgaagtttcaact
cagccacctccagaggaagaagaggaagatcaagatcagaatgaggatattccagaccta
actaattttgtgatagaagaactaaaacaacgttacgatagcgttataaacaggctctac
actggcattcagtgttactcttgtggaatgaggttcacaacttcacagacagatgtgtat
gcagaccatctggactggcattatcgccaaaaccgtacagaaaaggatgttagcaggaaa
gtcactcacagaagatggtactacagcttaacagattggatagagtttgaagaaatagcc
gatttagaagaacgtgcaaagagtcagttctttgaaaaagtacacgaagaagttgtgtta
aaaactcaagaagctgctaaggagaaggagtttcagagtgtccctgcaggcccagctgga
gtagacgagagctgtgaaatctgccaggagcagtttgagcaatattgggatgaggaagag
gaggaatggcatttaaaaaatgcaattcgtgtagaggaaaagatctaccatccatcgtgt
tacgaagattatcaaaagacttcatcgtttgattccaccccatctccaagcaaaactcct
gtggagaacccactaaatattatgttaaatattgtcaaacaagaaggacaggactcctgt
aacagccccaaagtcaaagacgaactggaagagaaagctaataattgcactgaggggaat
acacctgaatctgctgaaattaaaacagagcctgaaaaggttgaatcggtttaa
DBGET
integrated database retrieval system
