Comamonas thiooxydans: CtCNB1_1968
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Entry
CtCNB1_1968 CDS
T01109
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ctt
Comamonas thiooxydans
Pathway
ctt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ctt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CtCNB1_1968
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ctt03400
]
CtCNB1_1968
Enzymes [BR:
ctt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CtCNB1_1968
DNA repair and recombination proteins [BR:
ctt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CtCNB1_1968
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
AAA_30
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
ACY32714
LinkDB
All DBs
Position
complement(2228593..2232084)
Genome browser
AA seq
1163 aa
AA seq
DB search
MQLPKLTPGKRFHLPRPVGSADALLLARLGEREKQDGRVTAIVTADAADAHRLMEEMAFF
APELRCALFPDWETLPYDSFSPHQDLISERLATLWRINQRDKQHGADVVIVPATTALYRL
APPSFLAGYTFEFKQGQKLDEAKLKAQLTLAGYQHVSQVVSHGEYAVRGGLIDLFPMGSL
QPYRVDLFDDEIDSIRTFDPDTQRSLYPVPEVRLLPGREFPMDEEARAKFRSRWRELLEG
DPTRSRIYKDMGAGIATAGIEYYLPLFFDETATVFDYLGDEATVVLHGDLEPAFQRFWQD
TKDRYRLVQGDPDHPALPPETLFLSADQFYTRSKEHAQLALRPGTEDVADSAIFQKLEDL
SVLRGADDPLAKLQKHIASSASRVLLLAESDGRRESLLDFFRASGVNPPVFDSLAEFQAD
ATEKVGIATSSLMTGFAWVEEGLDFVTETELFASSPTGRRRRRQEQVSDVEALIKDLSEL
KVGDPIVHADHGIGRYRGLINMDMGQKNTDGTPALQEFLHLEYAADAVLYVPVSQLHLIS
RYTGVSPDDAPLHKLGGTQWEKAKRKAAEQVRDSAAELLNIYARRAARQGHAFRFPTADY
EQFVADFGFEETADQRAAIHAVVQDMISPQPMDRLVCGDVGFGKTEVALRAAFVAAMGGK
QVAFLAPTTLLAEQHYQTLVDRFSKWPIKVAEVSRFRSGKEITAAIKGISDGTVDIVVGT
HKLLSESTQFKNLGLLIIDEEHRFGVRHKEAMKAMRAEVDVLTLTATPIPRTMGMALEGL
RDLSVIATAPQRRLAIKTFVRNEGTGVIREAVLRELKRGGQIYFLHNEVETIENRKQKLE
EILPEARIAVAHGQMPERELERVMRDFVAQRYNILLCSTIIETGIDVPSANTILISRADK
FGLAQLHQLRGRVGRSHHQAYAYLMVPDLDGLTKQAQQRLEAIQQMEELGSGFYLAMHDL
EIRGAGEVLGENQSGNMMEVGFQLYNEMLSEAVRSLKAGKEPDLLSPLSASTDINLHAPA
LLPNDYCGDVHLRLSFYKKLATAKTADQIDTLLEEIVDRFGKLPPQAQTLIDVHRLRVLS
QPYGVVKVDAAPGVINISFKPQPPIDPMNIIHLIQKNKHIKLAGNEKLRIEKELENPKDR
AQMVRDVLRSLGQPLKNETAVHA
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgcaactgcccaagctcacccccggtaaacgctttcacctgccccgtccagttggcagc
gccgacgcgctgctgctggccaggctgggcgagcgcgaaaagcaggacggccgggtcact
gccatcgtcacggccgatgccgccgacgcccaccgtctcatggaagagatggccttcttc
gcccccgagctgcgctgcgcattgtttcccgactgggaaaccctgccctacgacagcttc
tcgccgcaccaggatctgatcagcgagcgcctggccacgctgtggcgcatcaaccagcgc
gacaagcagcatggcgccgatgtggtcatcgtgcccgccaccacggccctttatcgtctg
gctccaccctcgtttctggccggctatacctttgaattcaagcagggccagaagctggac
gaagccaagctcaaggcccagctcacgctggcgggctaccagcatgtgtcccaggtggtc
agccatggcgaatacgcggtgcgcggcggcctgatcgatctgttccccatgggctcgctc
cagccctaccgcgtggacctgttcgacgacgagatcgactccatccgcaccttcgacccc
gacacgcaacgcagcctctaccccgtgcccgaggtgcgcctgctgccaggccgcgaattc
ccgatggacgaggaggcgcgcgccaagttccgcagccgctggcgcgagctgctagaaggc
gaccccacgcgcagccgcatctacaaggacatgggtgccggcattgccacggccggcatc
gagtactacctgcctttgttctttgacgagacggccacggtctttgactacctgggcgat
gaggccaccgtggtgctgcatggagatctggagccagccttccagcgcttctggcaggat
accaaggaccgctaccgcctggtgcaaggcgaccccgaccacccggcgctgccgcccgag
acgctgtttctcagcgccgaccagttctatacccgcagcaaggaacatgcccagctggcc
ttgcgcccgggcaccgaagatgtggccgacagcgccatcttccagaagctcgaagacctt
tccgtgctgcgcggagccgatgacccgctggccaagctgcaaaaacatattgcatccagt
gcaagccgggtcttgcttctggccgaatccgatggcaggcgcgagagcctgctcgacttt
ttccgtgcctcgggtgtcaacccgcccgtgttcgattcgctggccgagttccaggccgat
gccacggaaaaggtcggcatcgccacctccagcctgatgacgggctttgcctgggtcgag
gaaggcctggacttcgtcaccgaaaccgagctgtttgccagcagccccacaggccgccgt
cgccgccgccaggagcaggtcagcgatgtggaggccctgatcaaggacctgtccgagctc
aaggtgggagaccccatcgttcatgccgaccacggcataggccgctatcgcgggctgatc
aatatggacatgggccagaagaacactgacggcacgcccgcgctgcaggagtttctgcat
ctggaatatgcggccgatgccgtgctctatgtgcccgtcagccagttgcacctgatcagc
cgctacaccggcgtctcgcccgacgatgcgccgctgcacaagctgggcggcacgcaatgg
gaaaaagccaagcgcaaggccgccgaacaggtgcgcgactcggccgccgagctgctcaat
atctacgcccgccgcgccgcgcgccagggccatgccttccgcttccccacggccgactac
gagcagtttgtggccgacttcggcttcgaggaaacggccgaccagcgcgccgccatccac
gccgtggtgcaggacatgatcagcccccagcccatggaccgcctggtctgtggcgatgtg
ggcttcggcaagaccgaggtcgcgctgcgtgcagcctttgtggcagccatgggcggcaag
caagtcgccttcctcgcccccaccacgctgctggccgagcagcattaccagaccctggtg
gaccgcttctccaaatggccgatcaaggtggccgaggtgtcgcgcttccgctcgggcaag
gagatcacggcagccatcaagggcatctcggacggtacggtggatatcgtggtcggcacg
cacaagctgctatccgaatccacgcagttcaagaacctgggcctgctcatcatcgacgag
gaacaccgctttggcgtgcgccacaaggaggccatgaaggccatgcgtgccgaggtcgat
gtgctgacactgacggccaccccgattccgcgcaccatgggcatggcgctggaggggctg
cgcgatctgtcggtgatcgccacggcgccgcagcggcgtctggccatcaagacctttgtg
cgcaacgagggcacgggcgtgattcgcgaagccgtgctgcgcgagctcaagcggggcgga
cagatctacttcctgcacaacgaggtcgagaccatagagaaccgcaagcagaagctagag
gaaatcctgccagaggcccgcatcgccgtggcccacggccagatgcccgagcgcgagctg
gagcgtgtgatgcgcgatttcgtggcccagcgctacaacatattgctgtgctcgaccatc
atcgagaccggcatcgacgtgccatcggccaacaccattctcatcagccgcgccgacaag
ttcggcctggcgcagctgcaccaactgcgtggccgcgtgggacgcagccaccatcaggcc
tatgcctatctgatggtgccggacctggacggcctgaccaagcaggcccagcagcggctg
gaggccatccagcagatggaggagctgggctcgggcttctatctggccatgcacgacctg
gaaatccgtggcgccggcgaggtgctgggcgaaaaccagagcggcaatatgatggaagtg
ggctttcagctctataacgagatgctgtccgaagccgtgcgcagcctcaaggccggcaag
gagcccgatctgctctcgccgctatcggcctccaccgatatcaatctgcatgccccggcc
ctgttgcccaacgactattgcggcgacgtgcatcttcgcctgtcgttctacaagaagctg
gccacggccaagacggccgatcagatcgataccctgctcgaggagatcgtggatcgtttc
ggcaagctgccgccccaggcccagaccctgatcgatgtgcaccgcctgcgcgtgctgagc
cagccctatggtgttgtgaaggtcgatgccgctcctggcgtgatcaacatcagcttcaag
ccccagccgccgatcgatcccatgaacatcattcacctgatccagaagaacaagcacatc
aagctggcaggcaacgagaagctgcgcatcgaaaaagagctggagaaccccaaggaccgt
gcccagatggtgcgcgatgtgctgcgcagcctgggccagccgctcaagaacgaaactgcc
gttcatgcctga
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