Comamonas thiooxydans: CtCNB1_3236
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Entry
CtCNB1_3236 CDS
T01109
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ctt
Comamonas thiooxydans
Pathway
ctt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ctt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CtCNB1_3236
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctt03019
]
CtCNB1_3236
03016 Transfer RNA biogenesis [BR:
ctt03016
]
CtCNB1_3236
Enzymes [BR:
ctt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CtCNB1_3236
Messenger RNA biogenesis [BR:
ctt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CtCNB1_3236
Transfer RNA biogenesis [BR:
ctt03016
]
Prokaryotic type
tRNA degradation factors
CtCNB1_3236
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
ACY33982
LinkDB
All DBs
Position
complement(3664936..3667584)
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AA seq
882 aa
AA seq
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MYIKKMNPRAKVADMNEEILGTVQGHRDGHGFVVRDDGERDIYLPPNEMRAVLHKDKVQV
RIARHDHRGRPEGRVVEIVERPDQPIIGRFLQESGVWLVAPEDKRYGQDVLIPSNATGAA
KPGQVVVVELTEAPALFGQPVGRITEVLGEVDDPGMEIEIAVRKYGVPHIFSDACLEQAK
ALPEKVRPADYKHRIDLTDIPLVTIDGEDARDFDDAVYCEPAKVGRSKGWRLLVAIADVS
HYVTTGSAIDVDAYDRATSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLCMVCDMLITAQG
EIHAYQFYPAVMHSHARFTYTEVAAILANTRGPEAAKRKERVQDLLNLYGVFQSLLKARE
ARGAVDFETTETQIVCDDNGRIEKIVPRTRNDAHKLIEEAMLAANVCSADFIDQSGQLGL
FRVHDKPSLEKQEILRNYLKAMGVSMSISENPSTKEFQQIANATKDRPDSQQIHTMLLRS
MMQAFYTPEGSGHFGLAFEAYTHFTSPIRRYPDLLVHRVIKAELNGTHYKLPSLPTPGEA
EAKMAKRLSSRVVEPGQKPRKRSAAKEFQAWEAAGLHCSANERRADEASRDVEAWLKCKY
MREHLGEEFAGTVSSVTTFGVFVTLDAMYVEGLVHITELGGDYFRFDEARQELRGERSGV
RYGIGARVRVQVSRVDLDGRRIDFRLVRDGEDGLVQTPRGGRGQAKDEGRGRRESRDERS
AGGYADKWSRRDAKANRAQRNAAAGPASAPEPDRAKQGRKAAKKAMLKSVNLAALEAEYA
QEQAAPKPEPVMESVIEVQQAKPRKAAGRKKVAALLAPDAPAISVVKAAVKPESKSVAKP
ATKVSTKSVAKSAPKAVKAAAKPVAGTKAAPASKTSKRKTER
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
ttgtatatcaagaaaatgaaccctcgcgcaaaagttgccgatatgaacgaagaaattttg
ggcactgtgcagggccaccgcgacggacacggctttgtcgtccgtgacgatggtgagcgt
gacatctaccttccccccaatgaaatgcgagcggtgctgcacaaggacaaggtccaggtg
cgtatcgcccgtcatgaccatcgcggtcgccccgaaggccgtgtggtagaaatcgtggag
cgtccagaccagcccatcattggtcgctttctgcaagaaagcggtgtgtggcttgtggcc
cctgaagacaagcgctacggccaggatgttctgattccttccaacgccacaggtgcggcc
aagccggggcaggtggtggtggtcgaattgaccgaggcgccggcgctgttcggccagcct
gtgggccgcatcaccgaagtgctgggtgaggtggatgacccgggcatggaaatcgagatt
gcggtgcgcaagtacggcgtgccgcatatcttctccgacgcctgtctcgagcaagccaag
gcgctgcccgaaaaagtccgacccgcagactacaagcaccgcattgatctgaccgatatt
cctctggtcaccattgacggcgaagatgcccgcgactttgacgatgccgtgtattgcgag
cccgccaaggtggggcgcagcaagggctggcgcctgcttgttgcgattgccgacgtgagt
cactatgtgaccacaggcagtgccattgatgtggatgcttacgaccgcgccaccagcgtg
tacttcccgcgccgagtgattcccatgctgccggaaaagctcagcaacgggctgtgctcc
ttgaaccccgacgtcgatcggctgtgcatggtctgcgacatgctgatcacggcgcaaggt
gagattcacgcctatcagttctacccggcagtaatgcatagccatgcgcgcttcacctat
accgaggtggctgcaatcctggccaatacgcgcggcccagaagcagccaagcgcaaggag
cgcgtgcaggatttgctgaatctgtatggcgtcttccagtccctgctcaaggctcgtgag
gcgcgcggtgccgtggactttgagacgaccgagacgcaaatcgtctgcgacgacaacgga
cgcatcgaaaaaatcgtgccgcgcactcgcaatgatgcgcacaagttgattgaagaagcc
atgctggcggcgaatgtctgcagcgcagatttcatcgaccaaagcgggcagcttggcctg
tttcgcgtgcacgacaagccctcgctggaaaagcaggaaattctgcgtaattacctcaag
gccatgggtgtgagcatgagcatcagtgaaaacccttcgaccaaggagtttcagcagatt
gccaatgccaccaaggaccgtccagactcgcagcagattcacaccatgctgctgcgctcc
atgatgcaggctttctatacgccggaaggctcggggcacttcggtctggcctttgaggcc
tatacccacttcaccagcccgattcgtcgttatccagacttgctggtgcaccgcgtgatc
aaggctgagctgaacggtacacactacaagctgcccagcctgcccacgccgggtgaagcc
gaagccaagatggccaagcgcctctcttcgcgtgtggtcgagccggggcaaaagccgcgc
aagcgctcggcggccaaggaattccaggcctgggaggctgccggcctgcactgcagtgcc
aacgagcgccgtgccgacgaggccagccgcgatgtggaggcctggctcaaatgcaaatac
atgcgcgagcatctgggcgaggagttcgcgggcacggtttcctcggtcacgaccttcgga
gtctttgtgacgctggatgccatgtatgtggaagggctggtgcatatcaccgagctgggc
ggcgactacttccgcttcgacgaagcccggcaggagctgcgtggcgagcgctcgggtgtt
cgctatggcatcggcgcacgagtgcgggtgcaggtcagtcgcgtggatctggacggacgt
cgcatcgacttccgcctggttcgcgatggcgaggatggcttggtgcaaacaccacgcggc
ggtcgtggccaagccaaggatgaggggcgtggccgtcgcgagtcgcgtgacgagcgtagt
gcgggcggctatgccgacaagtggagtcgtcgcgatgccaaggccaatcgtgcgcagcgc
aatgctgctgcgggccctgcttctgcacctgagcccgatcgcgccaagcaggggcgaaag
gcagccaagaaagccatgctgaaaagcgtgaatctggccgcactggaggcggagtacgca
caagagcaagccgcgcccaagcctgagcctgtgatggagtccgtcatcgaggtgcagcaa
gccaagcctcgcaaggcggcaggcaggaaaaaggttgcagccctgcttgcgcctgatgct
ccggccatctctgttgtcaaggctgcggtcaagcctgaatcaaagtcggtcgcaaagccc
gcaactaaggtctcaacgaagtctgtggcgaagtcggctcccaaagccgtaaaggctgct
gccaagcctgtggcgggtaccaaggctgcaccggcaagcaaaaccagcaagcgcaagacc
gagcgctga
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