Cyprinodon tularosa (White Sands pupfish): 119772145
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Entry
119772145 CDS
T07496
Symbol
frem1a
Name
(RefSeq) FRAS1-related extracellular matrix protein 1a isoform X1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119772145 (frem1a)
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Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Lectin_C
Calx-beta
Big_9
Motif
Other DBs
NCBI-GeneID:
119772145
NCBI-ProteinID:
XP_038124381
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All DBs
Position
Unknown
AA seq
2183 aa
AA seq
DB search
MGPQGRTLALTLLVGLLCLLTCSSDGSLVKVNKGLKVKRGQSVYLQEGDLQFHIPVQKDV
CKVEVVPNEPITQRVGRLVPQVFDCHYLSDEVKYVHNGCPLLKDDTVKLRLYRFTETETH
MEVFTLHVDIIAPECNIIKMGPKSLQVSEFYGLSDAIDGNVVSFHYERRSSLECSVQLRP
QESHLPAHGRLVTGDPERATKRGDEPESFIHLQQQLDNKARAMCKSEHCLKGLKLVTFTK
VPCDDFLLMGLKYQHIDPPSPDIDYIVIRLDLKDTRSGSIYQSEQAWLPVRIVGAMPNQP
PKPSFMSMFILEVDQFILTPLSTATLDAEDEETPKQLLVFNVTNPPKEGFITHLSDHTHP
ISSFTWLDLNDMLIAYQPPNSSHSQRRNYEVELEVYDFFFEKSSSITVHTSVRNADTNAP
RVSWNMGLSLLEGQSRPITWDQLQIVDNDNLNVVRVITVDGLLHGHLTVRGGKGFMFTIN
DIKAGVVCYHHDDSDSTKDFVIFRITDGRHQTRHKFPIKILPKDDSPPFLITNMLVEVLE
GQTTLLRGSTLKASDMDSSDDYILFNITRLPQAGEVMKIPGPGLAGYPVSRFLQKDLSQS
IVYYRHLGNEVFDDSFEVVLSDFHDPPNLSEPQVVVVHIASVPDQPPKEVPGSRRCLVVK
ETEIAHITRQQLHFADPESPDSELTYTVTTPPFFSGHYSSGSDAGRLFLVDSIPKFTKDS
NAPVLRLFTQHAVNFMKVAYMPPIMDIGPHPQYIQFILSVTNHLGKTVTGICFNITLMPV
DNQPPKVIANLLTVDEGGESLLGPEHLQVSDVDSLPEALRVELQRGPEHGVLHVGGHPLT
PGQNFTLQDLISRRVRYNHDSSETTEDTIELRATDGTNSVSFALPVKVIPINDELPVMVT
GLNPVLRCPEGEQIVITSEYIFATDVDSDNRSLAFLIARLPYHGVVLRNGVIVDRFIQAD
ITAGIIAYRHTGLEIGLTPRHDTITFVISDGENETSALCCGRETPTRGRSKTPQTRDSLP
VYDLHITVFPVDSQPPSLETGEIFKVDEGGTAQITAAHLRASDMDTVLDQLVVSLISPPQ
FGYIENVLPSPGFEKSNTGISIASFLYKDITKGYINYVQSRHLGIEPTADQFMLCVSDGK
RSSANIPFYIIINPTNDEIPEFMVQNITVQEGEMKHLDTSVFHAMDLDIPKNTLLFSVVR
PPQHGSIIHHSDGNPIIKRQEPDLWPSVAAFTMKDVKKGLDLMYLHDDSENMMDSFIIQL
TDGKHQLERRVMVEVLPVNDEEPHLIRNNGLEVKPGEARVISSVTLFAEDKDTPSTEIMY
IFESVPTQGILQLQEGQNWVTLTAGRRCTQDMVDMNLLRYIHTGHHATKTQDFFVFHLMD
GKNQSPPQHFQISVRDLEKGNIAIFVKPVNVSRGDRVVLTTDVLLATDDTDKPEELLYVI
TSPPAHGHIEYIKHPGVIISTFSQMDIAANLVAYVHDNRGEKATEKFQFVVSNGKTSRHG
SLELHVEMVDRVLPSLTSNKGLQVPQGSTMILGPDCLSLSDPDTPPGALTFSLHQPPQYG
TLLLAGVTLTAGSNFSMKHIKELEVTYRHDGGPSQIDRFAFTASDTSRRGFLLDGKLQTE
PVFFTIQIKPLDKSSPEVMKLLPLWKAELLPDGRYGIFLTSRELKAQDRDSREEELIFWI
VRSPYFGYLENITTGRFVPQRFSQSELSRRTIAYIISPDREILSDSLEFKVSDPLGNMGP
SHILQFQWSRVDFSQSESSSCEEQGKISLDIIRSGNLVESSYVTVKVIEGTATAEKDFRT
SLSSLIQFDPGVTKRTWQTDIVEDHIEEADEHFEVLLVSPEATVIGSISKAKLTIRDPGK
GECRPKQDQQAPLLGGKEIQPDTYPQHGSIRLEKLPLSKESVIWPRGDSISTQGEHLQRK
KLRVVNNPKSISPSTVFHNGTDVVYTYHGIMQMRVEDDASSRMSRRANIRVVSRGSQPQR
PGLTTDADSPREGRIQVKMGQARGNASTIISVAKACVPELMGLLHFNQSTNQLLHCNGVS
WKPWAPTDQLVGARMCPQGWTFQGGRCFILSTEHKLTWSAANRACRERFKGNLASVLSKA
DMNWLWDFSGRKPFWIGLSNGKGGGLWEWAGGEPVSYTNWKKAPPRSRMKGNRKCVLVWR
RAKWQIRDCKSGKGHRFVCSVKL
NT seq
6552 nt
NT seq
+upstream
nt +downstream
nt
atgggtccccaaggtcgcactctggccttgactttgcttgtcgggcttctgtgtttgctg
acctgctcatctgatggttccctggtgaaagtcaataagggcttaaaggtgaaacgaggt
cagtcagtctacctccaggaaggtgacctgcaattccacattcccgtccagaaggatgtc
tgcaaggtggaggtagtgccaaacgagcccataactcaacgagtgggaagacttgtgcct
caggtgtttgactgccattatctgtctgatgaagtaaagtatgtccacaatggctgtccg
ttgttaaaggacgataccgtcaagcttcgcctatacaggttcacagagacagagacacac
atggaggtgtttactctccatgtggacattatagcgcctgaatgcaacatcattaagatg
ggtcctaaatccctccaggtctctgagttctacggcctctctgatgctattgatggtaac
gtggtttcctttcactatgaaaggagatccagtctggaatgtagcgtccagcttagaccc
caggaatcccaccttccagctcacggccggctggtcactggagacccagaaagagccacc
aagagaggcgacgagccagaaagtttcatccacttacagcagcagctagataataaagca
agagcaatgtgtaaatctgaacactgcctaaagggtctgaagctagtgacgttcactaaa
gtcccatgtgatgacttcctcctgatgggattaaagtaccaacacatagatcccccgtct
ccagatatagactacattgtaatcagacttgacctcaaggacaccaggagtggcagcata
tatcagtctgagcaggcctggcttccggtccggatagttggcgcaatgcccaaccagcct
cccaaaccatctttcatgtccatgtttatcttggaggtagaccagttcattctcacgccc
ctctccactgccacattggacgctgaagatgaggaaactccaaaacagcttctggttttt
aacgtcacaaacccccccaaggaaggctttatcacccacctatctgatcacactcatccc
atctcatcctttacatggctcgatctgaatgacatgctcatagcatatcaacctccgaat
tcttcacattcccaacgaaggaattatgaggtagaattggaggtttatgatttcttcttt
gagaagagctcatccataactgtccacacatctgtaaggaatgcagatacaaatgcacca
agagtgtcctggaacatgggtcttagtctgctggagggtcagtctcgtccgataacgtgg
gaccaattgcaaatcgtggataatgacaatctgaatgtagttcgagtcatcactgtggat
ggcctcctgcatggacacctaactgtaagaggtggaaagggtttcatgttcaccatcaat
gacataaaagcaggagttgtctgttatcaccatgatgacagcgactccacaaaggacttt
gtcatttttcgcatcaccgatggccgccatcagacccgacacaagtttcccatcaaaatt
ctccccaaagatgacagccctccgttccttataaccaacatgctggtggaggtcttggag
ggccagaccaccctgctcagaggctccaccctcaaggcttcagacatggactctagtgat
gactatatcctctttaatatcactcgcctcccgcaggcaggagaggtcatgaaaatccca
ggaccagggctggcagggtaccccgtgagccgcttccttcagaaggacctttcccagtcc
attgtgtactacagacaccttgggaacgaggtgtttgatgactcatttgaggttgttctg
tctgatttccatgatccccctaacctttcagaacctcaggtggtcgtggttcacatagcc
tctgttccagaccaaccaccaaaggaggttcctggttccaggcgttgtcttgtggttaaa
gaaacagaaatagcccacatcacacggcaacagcttcactttgccgacccagagtcgcca
gacagcgagctcacttacacagttacaactccacctttcttctctggtcactacagcagc
ggttcagatgcgggaaggttattcttggttgacagcatacccaaatttaccaaagattct
aatgcaccagtcctcagactcttcacacaacatgcagtgaactttatgaaagtagcctac
atgcctccaatcatggacatcggccctcaccctcagtatatccagtttattctgtctgtg
accaaccatctgggaaaaacagtcactgggatctgctttaatatcactctaatgccagtg
gacaatcagccaccaaaggttatcgccaaccttctgactgtagatgagggaggggagtcc
ttgctgggcccagaacacttgcaggtgtcagatgttgactctctgccagaagcattgcgg
gttgagctccaaaggggaccagagcatggcgttctgcacgttggtggccatccactgaca
ccaggccagaactttacactacaggacctgatcagtcggagggttaggtacaatcacgac
agctcagaaactacagaagacaccattgagttgagagcaacagatggaactaattcagtc
agtttcgctctgcccgtaaaggtcatacctatcaacgatgagctcccggtgatggttact
ggtttgaacccagttctcaggtgtccggaaggagaacaaatagtaatcacttcagagtac
atctttgccactgatgtggacagcgataacagaagccttgccttcctgattgcccggctg
ccctaccatggggtggttctgcgaaatggtgttattgtagatcgcttcatccaagcagac
attactgcaggaatcattgcgtacagacacacagggctggagattggattaactcctcga
catgacactatcacgtttgtcatctctgatggggaaaatgagacatccgctttgtgctgt
ggcagggaaactcccaccagaggcagaagcaagactcctcagacacgggacagcttgcct
gtctacgacctccatatcacagtgtttcctgttgacagtcagccaccctcactggaaaca
ggtgagatctttaaggtggatgaaggtgggacggcccagataactgctgcccatttaagg
gcctctgacatggatacagtcctagaccagcttgttgttagtttgatctctcctccccag
tttggctacatagaaaatgtcctccccagccctggctttgagaaaagcaacacaggcata
agcatagcttcttttctatacaaggacatcaccaagggttatattaactatgtacagtcc
agacacctggggattgaacccactgctgaccagttcatgctttgtgtctcggatggcaag
cgcagctctgctaacatccctttctacattataattaacccaacaaatgacgaaattcct
gaatttatggtacaaaacatcacggtacaagaaggagaaatgaaacacctggacacatct
gtgtttcatgcgatggacctagacatccccaagaataccctgctcttctctgtggtcaga
cctcctcagcatggaagcatcatccatcacagcgatggaaacccaatcataaagagacag
gagcctgacctatggccttctgtggctgcctttactatgaaagatgtcaaaaagggtttg
gatctgatgtatctccatgatgacagtgaaaacatgatggacagttttatcattcagttg
actgatggcaaacatcagctagagagacgggtgatggtggaagttctaccagtgaatgac
gaagaacctcatcttatcaggaacaatgggcttgaggtgaaaccgggagaagctagggtt
atatccagcgttacattgtttgctgaggacaaagataccccctctacagaaatcatgtac
atttttgagagcgttccaacacaaggaatactacaactacaggaaggccagaattgggtg
acacttacagctgggagaaggtgtacccaggacatggttgacatgaaccttttgcgttat
atacacactggccatcatgccactaaaacacaggacttctttgttttccacttgatggat
ggaaagaatcagtcaccaccacagcacttccagatttctgtcagagatctggaaaaagga
aacattgccatctttgtgaagccggtaaatgtcagccgaggagaccgtgtggttcttacc
accgatgtgctgctggccacagatgacacagacaagccagaggagcttctatacgttatc
accagcccacctgctcacggacacatagagtacatcaaacatccaggggtgattatatcc
accttcagccaaatggacatagcagcaaaccttgttgcttacgtccacgacaacagagga
gaaaaggcaacagaaaagtttcagtttgttgtaagcaatggtaagactagtcgacatgga
agcttagagctgcatgtggaaatggtggatcgtgttctgccatcactgacgtccaacaaa
ggcctccaggtccctcagggttccaccatgatccttggcccagactgtctctctctgtcg
gatcctgacactccacctggtgccctgaccttttctctccaccagcctccgcagtatggg
actcttcttttagctggtgttacactgactgctggctcaaacttttcgatgaaacacatc
aaggagctggaggtgacatacagacatgacgggggaccgtctcagatcgaccggtttgct
ttcacggcctctgacacatccagacgaggttttttgttagatggaaagctgcaaacggag
ccagtgtttttcaccattcagatcaagcctttagataaatcttctccagaagtaatgaag
ctactcccactttggaaagcagagcttttacccgatggcagatatgggattttcctgaca
tctcgagagcttaaggctcaggacagagacagcagagaagaagagctcatattttggata
gttcgttcaccttattttggctaccttgaaaacattaccacaggcagatttgtgccacag
cgcttctcgcagtctgagctcagcagaaggacaattgcttatatcatcagtccagatagg
gagattctctcagacagcctggagttcaaggtgtctgatcctttaggtaacatggggccc
tctcacatacttcaattccagtggagcagagtggatttttctcagtctgagtcctcctca
tgtgaggagcagggaaaaatttctctggacatcattcgaagtgggaacctagtcgagtca
tcttacgtcactgtcaaggtgattgagggcaccgcaactgcagaaaaagacttccgtacg
agcctctcttcgctgattcagttcgatccaggagtaacaaagcggacttggcagactgat
atcgttgaggaccacattgaggaggcagatgaacatttcgaggtgctgcttgtttctcct
gaagctacggtcattggtagcatcagcaaggctaaacttacaatcagagacccgggaaaa
ggagagtgcagaccaaagcaggaccaacaagctcctcttctgggaggaaaagagattcaa
cccgacacgtatccccagcatgggtccatccgtttggagaaacttcccctcagtaaagaa
tcggttatatggcccagaggagacagcatctctacccaaggagaacatctccagaggaag
aaactcagagttgtcaacaatcccaaatctatttccccttcaacagtgttccacaatggg
acagatgtagtttacacatatcatggaatcatgcaaatgcgagtagaggatgatgcatca
tctaggatgagcaggagggcaaacatccgagtggttagcaggggttcacagccacagcga
cctggacttactactgacgccgactctccaagagaaggaaggattcaagttaagatggga
caagctcgaggaaatgcatccaccatcatctctgtagccaaggcatgcgtgccggagctg
atgggactcctgcatttcaaccagtccaccaatcaacttcttcattgcaatggcgtctcc
tggaaaccctgggcaccaactgaccagctggttggtgccaggatgtgtcctcagggatgg
acttttcaaggaggacgttgttttattctcagcactgagcacaagctgacatggagtgca
gcaaacagggcctgcagagaaaggtttaaaggaaatcttgcaagcgttttgtctaaagct
gacatgaactggttgtgggacttcagtggaagaaagcctttctggataggtctgagcaac
ggaaagggtggaggactgtgggagtgggcgggcggcgaacccgtcagctacacgaactgg
aaaaaggcgcctccccgctcgagaatgaaaggcaaccggaagtgtgtgctggtgtggaga
agagccaagtggcaaatcagagattgcaagagcggcaaaggccatcgctttgtttgctca
gtgaaactctaa
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integrated database retrieval system
