Cyprinodon tularosa (White Sands pupfish): 119786902
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Entry
119786902 CDS
T07496
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119786902 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ctul03041
]
119786902 (ddx46)
Enzymes [BR:
ctul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119786902 (ddx46)
Spliceosome [BR:
ctul03041
]
Complex A
U2 snRNP components
U2 related factors
119786902 (ddx46)
Complex B
119786902 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
119786902
NCBI-ProteinID:
XP_038146398
LinkDB
All DBs
Position
Unknown
AA seq
1078 aa
AA seq
DB search
MGRESSLNFNRHYRKRSTSRGRSGSRSKSRSPDNKRSKKDDRDRNRRDRSRSRDRRRSRS
RDRKRARRSRSRDRDRERERERERRRSRSRERKRSRSRSRTRRSRSGSPSKSKKAEEKAK
SKEKESVEPVSEKKKVKEEKEDEKVEDQDFDQNKLEEEMRKRKERVEKWREEQRKKAIEN
IGEIKKELEEMKQGKKWSLEDDDDDDDDSPALMEVDDEEDDGDAKVEGKEKDADEVKKED
GDEEKETPVEQQPEEDEVDPLDAYMEEVKQEVKKFNIGPMKGNDKKGSTTVTKVVTVVKT
KKQPLMHKKKGELMENDQDAMEYSSEEEEVDLQTALTGFQTKQRKVLEPVDHTKIQYESY
RKNFYVEVPELAKMTPEDVNAYRLELEGIIVKGKGCPKPIKTWVQCGVSMKILNSLKKQG
YEKPTPIQAQAIPAIMCGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRPLEDGEGPISVIM
TPTRELALQITKECKKFSKPLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLG
ANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALA
RRILAKPIEVQVGGRSVVCSDVQQHVLVIDEDQKFLKLLEILGHYQEKGSVIIFVDKQEH
ADGLLKDLMKASYPCLSLHGGIDQYDRDSIINDFKTGVCRLMVATSVAARGLDVKQLILV
VNYNCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQVRYAGDIIKALELSGSPVPPELEQ
LWGSFKDQQKAEGKVIKSSSGFSGKGFKFDETEHALANERKKLQKAALGLQDSDDEDGAL
DIEEQIESMFNSKKRVKDLSAPGAAGGAGGAVSAGGAAPGGVGGIAPTSAGNNQKLEMAK
RLALKINAQKNLGAEAQDVMQQATNAILRGDPIMTPSVSAKTIAEQLAEKINAKLNYTPV
EKLEEERQAAEQAETVKRYEEELEINDFPQTARWKVTSKEALQRIGEYSEAAITIRGTYF
PPGKEPKEGERKIYLAIESASELAVQKAKTEITRLIKEELIRLQNSYQPTSKGRYKVL
NT seq
3237 nt
NT seq
+upstream
nt +downstream
nt
atgggacgagaatcgagtttgaatttcaacagacactacagaaagcgttcaacgtcccgg
ggaaggtcgggcagccgatcaaagagtcgctccccggacaacaagcgctccaagaaggac
gaccgagaccgaaacaggagagatcggtccaggagcagagaccgcagaagatcccggtcc
agagacaggaaaagagccagacgttccaggagcagagacagagacagagaaagggaaagg
gagagggaaaggaggaggtccagaagccgggagaggaagagatcacgcagccggagccga
actcgcaggtcccgatcaggcagcccgtcaaagagcaagaaggcagaggaaaaagccaag
agcaaagagaaagagagcgttgagcctgtgtctgagaagaaaaaggtgaaagaagagaag
gaagatgagaaggttgaggaccaagactttgaccagaacaaactggaggaggaaatgagg
aagaggaaggagcgggtggagaaatggagagaggagcagaggaagaaggctatagaaaat
attggagaaataaagaaagagctggaagaaatgaagcagggcaagaaatggagccttgag
gatgatgatgatgatgatgacgatagtcctgctttgatggaggtggatgatgaggaggac
gacggggatgcaaaggtggagggaaaagaaaaggacgcggatgaagttaaaaaagaagat
ggagatgaagagaaggagactcctgtggagcagcagcctgaagaggatgaagtggatcct
ctggatgcgtacatggaggaggtcaagcaggaggtgaagaagttcaacataggtcccatg
aaaggaaacgataagaaaggatcaactacagtaaccaaagtggtgacggtagtcaagacc
aaaaaacaacccctcatgcacaagaagaagggggagctgatggagaacgaccaagatgcc
atggagtactcgtcagaggaagaggaggtggacctgcagacagctctgacaggctttcag
accaaacagagaaaggttcttgagcctgttgaccacactaagatccagtatgagtcgtat
cgcaagaacttctacgtggaggttcctgagctggccaagatgaccccagaggatgtgaac
gcatacaggctggaactggagggtataatagtgaaaggcaaaggttgtcccaaacccatc
aagacatgggtgcagtgtggggtgtcaatgaagatcctcaactccctaaagaagcaaggc
tacgagaagcccacacctatccaagcccaggccatccctgccatcatgtgcggcagagac
ctcatcggcatcgccaagaccggcagcggcaaaacaatcgctttcttgcttcctatgttt
cgacacattatggaccagaggcctctggaggacggagagggacccatctctgttatcatg
actccgaccagagagctggctctgcagatcaccaaagagtgcaagaagttctccaaacca
ctagggctccgggtggtgtgtgtttatggtgggacaggaattagtgaacagatcgcagag
ctgaaacgaggggcggagatcatcgtgtgcacaccaggaagaatgattgacatgctggga
gccaacagcgggcgagtaaccaacctgcggagggtcacgtatgtggtgctggatgaagca
gaccgcatgtttgacatgggctttgagccacaggtgatgcgtatcgtagacaatgtgcgt
ccagaccgacagacggtcatgttctccgccaccttccccagagccatggaggcgctggct
cgcaggatcctggccaagcccatcgaggtgcaggttggaggtcgcagtgttgtctgctct
gatgtgcagcaacacgtgctggtgattgatgaggatcaaaagttcctgaagctgctggag
attttgggtcactatcaggagaagggatctgtcatcatctttgtagacaaacaggaacac
gcagacggactgcttaaagatctgatgaaagcttcatacccctgtttgtctttacatgga
ggcatcgaccagtacgaccgagacagcatcatcaatgattttaagactggtgtgtgtcgt
ctgatggtggccacctctgtggcagccagaggcctggacgtcaagcagctcatcctggtg
gtcaactataactgccccaaccactatgaggattacgtccaccgggcaggacgcacaggc
agagcaggaaacaagggttacgcctacaccttcatcacagaggaccaggtccgctacgct
ggtgacatcatcaaggccttggagctgtcaggctcccctgttccaccggaactggagcag
ctttggggctcctttaaagatcagcaaaaagcggagggtaaggtgattaagagcagcagc
ggcttctcagggaaaggatttaagtttgatgagacagaacacgccctggccaatgagagg
aagaagctacagaaagctgcacttggattgcaggactccgatgacgaagatggagccttg
gatattgaggagcaaatagaaagcatgttcaactccaagaagagggtgaaggacctgtct
gctcctggcgcagctggcggtgcaggaggagcagttagcgccggaggagcagcacctggg
ggggtgggaggcatcgctccaacgtctgctggaaacaaccagaaactggagatggctaaa
aggctcgctctcaagatcaatgctcagaagaacctgggcgccgaggctcaggacgtgatg
cagcaggccaccaacgccatcctccgcggcgaccccatcatgacgccgtccgtgtcggcc
aaaaccatcgcggagcagctggcggagaagatcaacgccaaactgaactacacacccgtg
gaaaagctggaggaggagcggcaggcggctgaacaggcggagactgtgaagagatatgaa
gaggagctggaaattaacgacttccctcagacggccaggtggaaagtgacgtccaaagag
gctttgcagaggatcggggaatactccgaagctgccatcaccatcagagggacatatttc
cctccaggcaaagagcctaaggagggagaacgcaaaatctatctggccattgagagtgca
agtgaactggctgtgcagaaagccaaaacagagattacccggctaataaaagaagagctc
atcagattacaaaattcctaccagccaacaagcaaaggtcgctacaaggtcttgtag
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integrated database retrieval system
