Cyprinodon tularosa (White Sands pupfish): 119789003
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Entry
119789003 CDS
T07496
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
119789003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ctul03000
]
119789003
04121 Ubiquitin system [BR:
ctul04121
]
119789003
03036 Chromosome and associated proteins [BR:
ctul03036
]
119789003
Enzymes [BR:
ctul01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
119789003
Transcription factors [BR:
ctul03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
119789003
Ubiquitin system [BR:
ctul04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
SCF complex
Target recognizing subunit (F-box)
119789003
Chromosome and associated proteins [BR:
ctul03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
119789003
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
119789003
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
JmjC
Cupin_8
Motif
Other DBs
NCBI-GeneID:
119789003
NCBI-ProteinID:
XP_038149664
LinkDB
All DBs
Position
Unknown
AA seq
1388 aa
AA seq
DB search
MAQSPDGESGRRLRSICRRMYDENEDLSDVEEMVNIRGFSVEEKLSSDSYSSEFVHIMKG
RDFTYEYVQREALRIPLIFKEKDGLGIRMPDPEFTVSEIKGLVGSRRSVDVMDVSTQKGS
EMSMAQFVRYYETPEEERDKLFNVISLEFSHTKLEHLIKRPTVVDQVDWVDNMWPPDLRH
SQTEATNIISEMKYPKVQRYCLMSVKGCYTDFHIDFGGTSVWYHVFKGLKVFWLVPPTPY
NLALYEDWVLSGKQSDIFLGDRADGCQRVELKQGYTFFIPSGWIHAVYTPVDTLVFGGNI
LHSFNIPMQFTIHEIENRTKVHSKFRFPFYYEMCWYVLERYLHCLTKRSYLTQEMQKDSL
YYETKTKTESPSSDSRSQDINEDSCGPQVRDSHEEKTDRPAGDGACSPDNIKTPLLKTVL
SVDSEDSCNPSSSSIDFPKTPSDSPGSDPQSRWTHLTQHELIGLRTLVEKLESLPENKKC
VPVGIESPQALLDDMKLVLREHADDDPKLAITGVPVVLWPKKELKPRPPNRPKPKMAASP
ASAVKLSASRGTSGARRRRTRCRKCEACLRTECGECHFCKDMKKFGGPGRMKQSCIMRQC
IAPVLPHTAVCLVCGEAGKEDTVEDEEEKFNLMLMECSICNEIVHPNCLKVKDSNGLVND
ELPNCWECPKCNHAGKTGKATKQKRGPGFKYASNLPGSLLKEPRLNRDSKEEPEPLPPVV
TATATVPTLTTTSAVKRKAEREGSSKKNEEEPPKKRPPLLALDSLPRTRLEDNPLRKKRK
LFDTNDEPSMLKRKKKLLKPDDQFSPKLLQQIKTENDHREEDEGQWDHEEDAISLDRMHF
RRKNENDSELQNEDTEEEEPAVKEKDGGTHDKTKALASPLLRTSSAREGDLSSSNSPRAG
PSSESGDGQEKSSSQLKARHQRRRHPNKGLSKELSQEMLKMDDSLSNQKLSAEKTENNAH
YRRPLKNEDSLTNQNCKPIKTEETQNRKAPKLEHSVANYHRQPLKTEDSSGNQNRSPVKA
EPGSEADEQKPRWPLNNGSSDLGDWLRHRGREVNGTPHGYSPLSWNRSTPITPLCPRPLP
RRSPPKCVQMERHVIRPPPISPPPDTLPLNEGEAHVMRREVWMKVFSHLPHRDLCVCMRV
CRAWNRWCCDKRLWKHISLNRCKSITPLMLSGIIRRQPVALDLSWTNISKKQLSWLINRL
PGLRVLLLSGCSWVAVSALCTSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQLDN
RSKLRNVEDLRLAGLDITDTSLCLIIRYMPLLSKLDLSYCNHVTDQSVNILTAAGTTTRD
SLTDINLSVCNRVTDQSLTYFKRCGSICHIDLRYCKQVTKEGCDQFIAEMSVSVQFELIE
DKLLQKIS
NT seq
4167 nt
NT seq
+upstream
nt +downstream
nt
atggctcagtctccggacggagaaagtggacggaggctgcgctccatctgccggaggatg
tacgatgagaacgaagacctgtccgacgtggaggagatggtgaacatcagaggattcagc
gtggaggaaaaactctccagtgactcttacagctcagagtttgtccacataatgaaggga
agagatttcacttatgaatatgtgcaaagggaggccctcaggataccacttatttttaaa
gagaaagatggattagggataagaatgcctgatccggaattcacagtcagtgaaataaaa
ggattagttggaagtcgcaggtctgtggatgtcatggacgtcagcactcaaaaaggctct
gaaatgagcatggctcagtttgtccgttattacgagacaccagaggaagagcgcgacaag
ctcttcaatgtcataagcttagagttcagccacactaagctggagcatctcatcaagcgg
cccacagtggtggatcaggttgattgggtggacaacatgtggcctcctgatctgaggcat
agccaaacagaagccaccaacattatttcagagatgaaataccccaaggtgcaaagatac
tgtctgatgagcgtgaagggctgctacacagactttcacatcgatttcggaggaacttca
gtttggtatcatgtattcaaaggactaaaagtgttctggcttgtgcctccaaccccatat
aaccttgcactgtatgaggactgggtcctttcaggcaaacagagcgacatcttcctggga
gaccgagctgatggatgtcagagagtggagcttaaacaaggatacaccttcttcatcccg
tctggatggatccatgcggtttacactcctgtggacacactagtgtttggaggcaacatt
ctgcacagctttaacatccctatgcagtttaccatccatgagatagagaacaggacaaag
gttcattccaaattccgcttcccgttttactacgagatgtgctggtacgtcctggagcga
tacctgcactgtctgaccaaacggtcctacctcactcaggagatgcagaaagactctctt
tactatgagacaaagacaaagacagagagcccctcttcagactccaggagtcaggacata
aatgaggactcctgtggaccacaagtcagggacagccatgaagaaaaaactgacaggcca
gctggagatggcgcctgctcgcctgacaacatcaagaccccactgctcaaaacggtttta
tctgtcgactcggaggacagctgtaatcctagctcctcctctatagatttccccaaaacc
ccctcagattctccaggctccgatcctcagagcaggtggactcatctgacgcagcatgag
ctgatcgggctcaggacgctggtggagaagctggagtctctccctgaaaataaaaaatgt
gttccggtgggaatagagagtcctcaggcgctcctggatgacatgaagcttgtcctgagg
gaacacgctgacgatgacccaaagttggcgatcaccggggtgcctgttgtgttgtggcct
aagaaggagttaaagccccggcctcctaaccggccgaaacctaagatggcagcatctcca
gcatcagcagtcaagctgtcggccagccgaggaacgtctggtgccaggagaagaagaacg
cgctgcagaaagtgcgaagcatgcttacggacggagtgtggagaatgccacttctgcaaa
gacatgaagaaatttggagggccggggcggatgaaacagtcctgcatcatgaggcagtgc
attgcacctgtccttcctcacacagcagtgtgtctggtttgtggagaagctggaaaggag
gacactgtggaggatgaggaggagaagtttaaccttatgctcatggagtgctccatctgt
aatgagattgttcatccaaactgtctcaaggttaaagactcaaacggattggtcaatgat
gagctgccaaactgctgggagtgtccaaagtgtaaccatgcagggaagactgggaaagcc
acaaagcaaaaaagggggccaggatttaaatacgcatcgaacctgcccggctctctgctc
aaagaaccacggttaaaccgagactcaaaagaggagcctgagccgctgccgccagtagtg
acagctacagcaaccgttcccacgctgacgacgacgtctgctgtgaaaaggaaagcggag
cgggaaggttcctccaagaagaatgaggaggagcctccaaagaaacgtccgccgctgctg
gctctggatagtttgccgcgaacacggcttgaagataatccattgcggaagaagaggaag
ctgtttgacacaaacgatgaaccatctatgttgaaaaggaagaaaaagcttttaaaacca
gatgatcaatttagtccaaagcttttgcaacaaatcaagacagagaatgatcacagggag
gaagatgagggacagtgggatcatgaagaagatgccatatccttggacagaatgcatttt
agaaggaagaatgagaatgacagcgagctgcaaaatgaggacacagaggaagaggagccg
gctgttaaagagaaagatggcgggacacacgacaaaaccaaggcacttgcaagtcccctc
ttaagaacatcgtctgccagagaaggcgacctttcgtcctccaactctcccagagctgga
ccaagcagtgagtcaggagatggccaggagaagagctcctctcagcttaaagctcgccat
cagcgacgccgtcatccaaacaaaggactgagcaaagagttgagccaagagatgctcaag
atggatgattctctgagcaaccagaagcttagtgcagagaagacggagaacaacgctcat
tatcgcaggccgctcaaaaatgaggactctttaaccaatcagaactgcaaacccatcaaa
acagaagaaactcagaatcgaaaagcccctaaactggagcacagtgtggcaaactaccac
aggcagccgctgaaaacagaagacagttcaggaaaccagaatcgcagtcctgtaaaagcc
gagccggggagtgaagcggatgaacagaagccaagatggcccctcaacaatggcagcagc
gacctgggcgactggctgagacacagggggcgggaggtaaacgggacgccgcacgggtac
tccccactcagctggaacagaagcacaccaataacacctttatgtcctcgtccactcccc
cgccgctcaccaccgaaatgcgttcaaatggaacgccacgtcattcgaccacctcccata
agccctccgcccgacaccctgccgttaaacgagggggaggcccatgtgatgcggcgagag
gtgtggatgaaggtgttcagccaccttcctcacagggatctctgtgtctgcatgcgtgtc
tgcagagcgtggaacagatggtgctgtgataaaagactttggaagcatatcagcctgaac
agatgtaagtcaataacacctctaatgctgagtggcatcatccggcgtcagccagtagct
ctggacctcagctggaccaacatctccaaaaaacagctcagctggctcatcaacagactt
cctggtctgcgtgtgttgcttctctcaggatgctcctgggttgccgtctctgccctgtgc
acttctagctgtcctctgctgcgaacgctggatgttcagtgggtcgagggactcaaagac
gcccaaatgagagacttactgtcgccccctacggataacaggccaggtcagttagataac
aggagcaagctgcgtaacgtggaggaccttcgtctggctggactggacatcaccgacact
tctctgtgcctcatcattcgttacatgcctcttctgtcgaagctggacctcagctattgc
aaccacgtcaccgaccagtctgtcaacatccttactgccgcagggacaactaccagagac
tccctcactgacatcaacctgtcagtctgtaacagggtcactgatcagtcgctgacctac
ttcaaacgctgtggtagcatctgtcacatcgacctgcggtactgcaaacaggtgaccaag
gaggggtgtgaccagttcatcgctgagatgtccgttagcgtccagtttgagctaatagag
gacaaactgctgcagaagatcagctag
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integrated database retrieval system
