Cyprinodon tularosa (White Sands pupfish): 119790728
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Entry
119790728 CDS
T07496
Name
(RefSeq) collagen alpha-1(XIX) chain
KO
K24340
collagen type XIX alpha
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ctul00536
]
119790728
Glycosaminoglycan binding proteins [BR:
ctul00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119790728
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
119790728
NCBI-ProteinID:
XP_038152345
LinkDB
All DBs
Position
Unknown
AA seq
1090 aa
AA seq
DB search
MNYYLIRCTALLWIVNSVPHAFGMAVTEQTDGVCPSLIVEDYRFSDVLDRPLMITGFDLT
EKFLLRRGTVTEELPSFRLGSSPLIKPTKLIFPEGLSSEYSLVSIFRVRRTTKKDRWYLW
QIFDQSGTSQVSVVVDGDKKAVEFSYQGLLKNSLRYTFKSRDLHVLFDRQWHKLGISVQT
DVVSIYVDCKLAEKKMTDERDNIDLNGRTLISTRIEDGRPVDIELRQILIYCDPYMAEME
NCCELLEPKCGVERTFTGTSPPPVTAQSPLVLSQPTSQSIDRCHCPAEKGDAGLPGMLGL
FKPDGRKGDKGELGLEGQKAIDGEKGDDGLAENSELPGRNECLKGDQGPRGEKGEKGSAG
EPGHPGKEGKRGKRGKPGEPGPRGPPGPLGTSEGASVKGEKGESGIPGEKGERGDPGQPG
AEGTGGVKGQKGDIGPPGPPVSVMTAHGLRQLSGTDESTQKGEKGAEGERGAQGPPGLKG
SIGPPGLKGDQGPEGKQGLPGSIGLPGLPGNAGLPGEPGVPGRDGLKGEKGDSGGVIGPQ
GPPGPKGEPGEPGGGYMSEGLSLNRGSRGPKGERGVPGLPGDHGEKGEPGESIIGPVGPP
GKPGAEGLRGPPGFSGPPGAPGREGSPGRPGPPGPAGPPGEPTALPIVGDMGALLKNACS
LCQTRVPGLPGQKGEKGSPGAQGVEGFVGEKGDPGVRGPMGNPGKEGPKGVKGERGFPGP
TGDKGDEGPPGAPGLPGVAGRTGAPGLVGRPGPVGPQGSKGEKGNEGPPGRQGLPGPPGV
PYVEGKGMSSLYKLQSGGAILGPPGAPGAPGPKGDEGAIGEPGPMGLPGLEGLPGAKGDI
GLPGPPGGTGPSGKPGSRGEPGIPGEPGERGPIGETGFPGPEGPQGVPGRPGKDGTPGYK
GSTGVPGDRGSKGERGDPGIPGERGVQGERGRVGDPGPIGPMGPPGGKGDPGPPGQLGSV
KLLDDPSFTEELKIFIQSEVIRIFEEKVSGAAMQQKTPAGILASPFQGPPGPPGKDGSPG
PPGEPGPPGPQGYRGQKGERGQLGFGLPGDPGPTGPPGPPGITSRGPPGSPGPRGPPGTC
DPNDCILPPL
NT seq
3273 nt
NT seq
+upstream
nt +downstream
nt
atgaattattacttgataagatgtactgctttattatggattgtgaactctgttcctcat
gcttttggaatggctgtgactgaacagacagatggtgtttgtccctctttaattgtggag
gattacaggttttctgatgttttagatcgtcctttaatgatcacagggtttgatctcaca
gaaaaatttcttctccgaaggggaacagttacagaagaactaccatcttttcgtctagga
agcagccctcttataaagccaacaaaattgatatttccagagggactttcaagtgagtat
tcgctggtgtccatcttccgtgtgagacgaactacaaaaaaagaccgctggtacctttgg
caaatatttgaccagtcaggaactagccaggtgtctgtggtggttgatggcgataagaaa
gcagtggagttttcctaccagggcttactgaaaaactctctccgctatacatttaaaagt
cgtgacctgcacgtcctctttgatcgccaatggcacaagctcggcatttctgttcagact
gatgtagtctctatttatgtggactgcaaactggctgaaaagaaaatgactgatgagagg
gacaacatcgatctcaatgggcgcaccctaattagcacacggatagaagatggaaggcct
gtggatatcgagttgagacaaattttgatctactgtgacccttatatggctgagatggaa
aattgctgtgagctgcttgagccaaagtgtggagtcgaaaggacatttactgggacctcc
cctcccccggttacagcccagagtcccctggtgctgtctcagccgacctcacagtcaatt
gacagatgtcactgtccagcagaaaagggagatgctggtctcccagggatgcttggactg
tttaaaccagacgggagaaaaggagacaagggggaacttggattagaagggcaaaaggca
atcgatggagagaagggggatgatggcctggctgaaaactcagagctgcctggcagaaat
gaatgcctcaaaggagatcagggccctcgaggagaaaaaggagaaaagggatcagctgga
gagccgggtcatccaggcaaagagggcaaaaggggaaagagaggaaagcctggggagcct
ggaccaagaggcccacctggtcctttaggaacctcagagggagcaagtgtcaagggggag
aagggggagtctggcatccctggggaaaagggagagagaggagatcccggtcagccaggt
gcagaggggactggtggcgtgaaaggacaaaaaggtgacattggcccgcctggtcctcct
gtgtctgtgatgacagcacatgggttaagacagctctctggaactgatgaaagcactcag
aagggtgaaaagggagccgagggcgagagaggagctcaaggaccaccgggccttaaggga
agcataggaccaccgggactgaagggagatcaaggaccagagggaaaacaaggtctacct
ggatccattgggcttcctggactcccaggcaatgctggcttaccaggggagccaggggtg
cctgggagagatggcctgaaaggagaaaagggagactctggtggagtgattgggccacag
gggcctcctggtcctaaaggggaacctggagaacccggtggtggatatatgagtgaaggg
ctgtcactgaatagagggtctcgcgggcctaagggtgagagaggtgtgcctggactgcct
ggagaccatggagagaaaggagaacctggggagagcattattggccccgtgggaccccca
gggaagccaggagctgagggtcttcgtggaccaccaggtttttctggccctcctggagct
ccaggaagggagggctcccctggtagaccaggtccaccgggccctgctggacccccaggt
gaaccaactgctctgcctatcgttggagacatgggtgctttactgaagaacgcctgcagt
ctttgccagacaagagttcccgggctgcctgggcagaagggagagaaggggtcccctgga
gcgcaaggagtagaaggctttgttggagaaaagggggacccaggtgtaagaggtccaatg
ggtaatccaggaaaagaaggcccaaagggtgtaaaaggagagagagggttcccaggtccc
actggagataaaggtgacgaggggccacctggagctccaggacttcctggtgtggctggc
cgaacaggagcaccgggactagtaggtagacctggtccagtgggtccacaaggatcaaaa
ggagaaaaaggaaatgaaggacctccaggcagacaaggacttccaggtcctccaggtgtg
ccgtatgtggaggggaaggggatgagcagtctgtacaagctccagagtggtggagctatt
ttaggaccccctggtgcacctggtgccccgggtccaaagggagacgaaggagctattggg
gaaccgggacccatgggcttacctgggctcgaagggcttccaggtgccaagggtgatatc
ggcctcccaggtccccctgggggaactggtccttcagggaagcccggcagtcgcggagag
ccagggatccctggagaaccgggtgagagggggcctatcggagagactggattccctgga
cctgaaggacctcaaggtgttcctgggaggcctggaaaagatggaactcctggatacaag
ggatccacaggtgtaccaggtgacaggggatccaaaggagaacgtggtgatccaggcatt
ccaggagaaagaggtgttcaaggtgagagaggtcgtgtaggagatcctggccccattgga
ccaatgggaccaccaggaggaaaaggagatcctggcccccctggacaattaggcagtgta
aaactgctggatgatcccagctttacagaagaactcaaaatctttatccaaagtgaagta
ataaggatttttgaagagaaagtttctggcgctgctatgcaacagaaaacacctgctggg
atcttagcttcacccttccaaggtcctccaggaccacctggcaaggatgggtcacctggt
ccaccaggagagcctgggcctccgggccctcaaggatacagaggtcagaaaggagagcga
ggacagcttggcttcggtttaccaggagatccaggacccacagggccaccaggcccacct
gggatcacctcaagaggccctcctggctctccgggccctcgtggacctcctgggacatgt
gaccccaacgactgcattcttcctcccttgtaa
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