Chryseobacterium turcicum: LNP04_08700
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Entry
LNP04_08700 CDS
T08775
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ctur
Chryseobacterium turcicum
Pathway
ctur03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ctur00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LNP04_08700 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ctur03400
]
LNP04_08700 (ligD)
Enzymes [BR:
ctur01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LNP04_08700 (ligD)
DNA repair and recombination proteins [BR:
ctur03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LNP04_08700 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
UFH33760
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All DBs
Position
1908982..1910910
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AA seq
642 aa
AA seq
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MGDEKKLENFIKPMLAKLSENAFDDEDWIFEIKWDGYRAVADLSKKQPLFYSRNGISFLS
KFDTIAEDLSQQKHKMIVDGEIVAYDENGKPSFQLLQQIGDNPDLALTYQVFDLLWLNGH
STEELPLIQRKELLKDALVETDLIKFCDHIPEKGIDFFNQMKKMQLEGMIAKKADSIYSQ
NSRSTDWLKIKFTNTEEAIICGFTEPKGSRQGFGALILGKYRDGKLIYSGHTGTGFNNEL
LMQLHEKLKKIVVKTSPFETAPKTNMPVTWTKPELVCEIKFSEITKDGMFRHPVFVALRE
DKEAKEISNSVKKPAQKTSKSKTMTTKKLSENTEDEKDKDTEITLNRHKINLTNQNKIYF
PKNKISKGDVVDYYQSVADYILPHLKNRPLSLNRFPSGIDHSGFYQKDAGDSFPDWIKTT
KVHSESTDKYIDYAICNDKATLAYLNNLGCIDFNPWNSSLPDLDHPDYLVLDLDPSKKNT
FDHVIETAQAVKEVLDLIKIKGYCKTSGSTGIHIYIPMGGAYDYNQVKDFALILMQQVHE
KLPKITTLERNLQKRDDNKIYLDYLQNRQGQTLASVYSLRPKEGAAVSMPIEWDELKKGL
KPTDFNIENALERIKAKGDLFKTVLGKGIDMMKALELLEGIN
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
ttgggtgatgagaaaaaactcgaaaatttcatcaaaccaatgttggcaaagctttctgaa
aatgcgtttgacgacgaagactggatttttgaaattaaatgggacggttaccgagccgtt
gcagatctcagcaaaaaacaaccgctattctactcccgaaacggaatttcatttctatct
aaatttgataccattgcagaagatttaagtcagcaaaaacacaaaatgatcgtggatggt
gaaattgttgcttacgacgaaaatggtaaaccaagctttcagctattgcagcaaatcggt
gataatccggatttggctttaacgtatcaggtttttgatttgctttggctcaacggtcat
tctaccgaagaacttcctttaattcaacgaaaagaacttctaaaagatgctttggttgag
actgatctgattaaattttgcgatcatattccagaaaagggaatcgatttctttaatcaa
atgaaaaaaatgcaacttgaaggtatgattgccaagaaagctgatagtatctattctcaa
aatagccgaagtacagattggctcaaaataaaatttaccaataccgaagaagctattatt
tgtggtttcacagaaccaaaaggctcaagacaaggttttggagcattaattctgggaaaa
tatagagatggaaaactgatttactcgggacatacaggaacaggctttaataatgaatta
ttaatgcaactccatgaaaaattgaaaaagatagttgtaaaaacgtcaccgtttgagact
gccccaaaaacaaatatgcctgtaacatggacgaaacctgaattggtctgtgaaattaaa
ttttcagaaatcacgaaagatgggatgtttcgccaccctgtttttgttgcacttcgggaa
gataaagaggcaaaagaaatcagcaattcagtaaagaaacctgctcagaaaacttcaaaa
tccaaaactatgacgactaaaaaattatccgaaaacacagaagatgaaaaagacaaagac
acagaaattacactgaaccgtcacaaaataaacctcaccaatcagaacaaaatctatttt
ccaaaaaataaaatcagtaaaggtgacgtggtggattattatcagtcggtagcagattac
attttaccgcatctgaaaaaccgaccgctttctctcaaccgttttccaagtggcatcgat
cattcaggattttaccagaaagatgcgggagactcatttccggactggataaaaacgaca
aaagtacattcagaatctaccgacaaatacattgattacgccatttgtaatgacaaagcg
acattagcttatttgaataatttaggttgtatcgattttaatccttggaattcttcactt
cctgatcttgatcatccggattatttggttttagatcttgatccttcgaagaaaaacact
tttgatcatgttattgaaacggctcaagctgtgaaggaagttttagatttaattaaaata
aaaggttattgcaagacttcgggtagcacaggaattcatatttacattccgatgggtgga
gcatacgattacaatcaggtaaaagattttgcgctgatcctgatgcagcaagtccacgaa
aaacttccaaaaattacaacgctggaaaggaatcttcaaaaaagagacgacaataaaatc
tacctcgactatcttcaaaaccgccagggccaaactttagcgagcgtttacagtctcaga
ccgaaagaaggtgccgctgtttcgatgccgattgagtgggatgaactgaaaaaaggtttg
aaaccaaccgacttcaatattgaaaatgctttggaaagaattaaagcaaaaggagatttg
tttaagactgttttgggaaagggaattgatatgatgaaggcactggagctgttggaaggg
ataaattga
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