Chryseobacterium turcicum: LNP04_12725
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Entry
LNP04_12725 CDS
T08775
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ctur
Chryseobacterium turcicum
Pathway
ctur03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ctur00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LNP04_12725 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ctur03400
]
LNP04_12725 (mfd)
Enzymes [BR:
ctur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LNP04_12725 (mfd)
DNA repair and recombination proteins [BR:
ctur03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LNP04_12725 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Choline_kin_N
Motif
Other DBs
NCBI-ProteinID:
UFH30838
LinkDB
All DBs
Position
2778035..2781415
Genome browser
AA seq
1126 aa
AA seq
DB search
MHLKTIKESFLPDLLKKEFGREIFIQLENHQHLSIKGSAGSSVSIFTAELFLTHKKTILY
LVDDKEDALYVNTEMEDLLGKEKVLYFPATHLEPYQVEKTQNANLVLRTDVLNKINSEKS
PKIIVAYMGALSEKVLKKEDFKAISHHIKVGDQLDFDFVDELLSHYQFQQTDFVSEPGEF
SVRGGIVDVFSYSNEKPYRITFFGNEVENIKTFDIETQLSVDKVKDFQLVSNMNFSVSGS
RVSLLELLPKDSFVISKNAVVGLQKVRSFYEKSQEKYETLSKDISHRTPQELFISDEEFL
FDYKKFKTIDFSPQSIEIPNIEQVEIKQTQQPSFHKNFELLIEDLEEKQQQGFETWISFS
TDKQKERLESIFEDINFGDSGVSKISFKSFKSELHEGFVDTDHKLLVYTDHQIFDRYQRY
KAKNTFAKSEQLTLKDLMSLKVGDYIAHIDHGIGKFMGLVKVNNDGKIQECFKLTYKNGD
LLYVSIHSLHKISKYNGPDGKEVVLSKLGSPAWKSLKQKTKAKVKQIAFDLIKLYAERKT
AKGFAYTPDSYLQNELEASFIYEDTPDQEKATIDVKNDMEADTVMDRLVCGDVGFGKTEV
AIRAAFKAATDGKQVAILVPTTILAFQHYRSFKERLKDFPVNVSYLNRFRTAKQKSETIA
GLKDGKIDIVIGTHQLASEKVKFKDLGLLIIDEEHKFGVSVKDKLKTLKSNIDTLTLTAT
PIPRTLQFSLMAARDLSVIKTPPPNRQPVETHMVGFSEEIIRDAVSYELQRDGQVYFINN
RVENLKDIAGLIQRLVPDARVITGHGQMEGKQLERNVLDFMEGKYDVLVATTIVESGVDV
PNANTMFINDAQRFGMADLHQMRGRVGRSNRKAFCYLITPPLDMVTSDARKRLEAIEQFS
DLGSGFQIAMKDLEIRGAGDLLGGEQSGFINEMGFETYQKMMQEALEELKDDKDFENLFE
NEADRQKLFKSVKEVNIDTDLELMLPDSYISTTEERLLLYQKLAEIDNEIDLQKFESELT
DRFGTLPSEAVNLLKSVALKWLAADIGFEKIVMKNGIFLGYFPNNPQDKFYQTDKFRHII
SYLTQNPSQAQLKEKIGKEGNQLMMRKDGVQNVDEVNLLLKSILSL
NT seq
3381 nt
NT seq
+upstream
nt +downstream
nt
atgcatttaaaaaccataaaagaaagctttcttcctgatcttcttaaaaaagaattcgga
agagaaatttttattcagcttgaaaatcatcagcatctttcaataaaaggaagtgctggt
tcttcggtttcgatttttactgccgaactttttcttactcataaaaaaacaattctttat
ctcgttgatgataaagaagacgccttgtatgtaaacaccgaaatggaagatttgctgggt
aaagaaaaggttttgtattttccggcaacgcatctggagccttatcaggtggagaaaact
cagaatgccaatttggttttaagaaccgatgttttaaataaaataaattccgaaaaatct
ccgaaaatcattgttgcctacatgggtgctctgtctgaaaaggttttgaagaaagaagat
tttaaagccatttcgcatcatattaaagtgggtgatcagcttgattttgattttgtagat
gaattgctttcgcattatcagtttcagcagaccgattttgtttccgagccgggagaattt
tctgtacgtggaggaattgtagacgttttttcttattcaaacgagaaaccttaccgaatt
actttctttgggaatgaagtagaaaacattaaaacttttgacatcgaaactcagctttct
gtcgataaagtgaaagattttcagttggtttctaatatgaatttttcagtttccggaagt
cgagtttccttgcttgaacttttgccgaaagatagttttgtgatttctaaaaatgccgta
gttggtttacagaaagtcagaagtttctatgaaaaatctcaggaaaaatatgaaacatta
agcaaagatatttctcacagaactccgcaggaactatttatttctgatgaagaattttta
tttgattacaaaaaatttaaaaccatagatttcagtccacaatcaattgaaataccaaat
atagaacaggtcgaaatcaaacaaacgcaacaaccttcttttcacaaaaatttcgaatta
ctaattgaagatttagaagaaaagcagcagcagggttttgagacgtggatttctttttct
accgataaacaaaaggaaagactagaatctatttttgaggacatcaattttggtgattca
ggggtttcgaaaatctcatttaaaagttttaaatctgaacttcacgaaggttttgtagat
accgatcacaaacttcttgtgtataccgatcatcagatttttgaccgttatcagagatat
aaagctaaaaacacatttgccaaatctgaacagctgacgctgaaagatctgatgtccttg
aaagtaggagattatatcgctcacatcgaccacggaatcgggaaattcatgggattggta
aaggtaaacaacgacggaaaaattcaggaatgttttaaattaacatataaaaatggagac
ttattatatgtaagtattcattctcttcataaaatttcaaaatacaacggtccggacgga
aaagaagttgttttgagcaagcttggttcacccgcttggaaatcattgaagcagaaaaca
aaagccaaagtcaagcagatcgcttttgatttaattaaattatatgccgaaagaaaaaca
gcaaaaggttttgcctacacaccagattcttatctgcagaatgagctggaagcaagtttc
atctacgaagatacaccagatcaggaaaaagcaaccattgatgtaaaaaatgatatggaa
gcggatactgtgatggatcgtttggtttgtggcgacgttggttttggtaaaacagaggtt
gcgattcgtgctgcgtttaaagcggctactgatggaaaacaggtggcaatcttggttcca
accactattttggcatttcagcattaccgaagttttaaggaaagattgaaagatttcccg
gttaatgtttcttatttaaacagattcagaacggcaaagcaaaaatctgaaaccatagcg
ggcttaaaagatggaaaaatagacattgtcatcggaacgcaccaactggcttccgaaaaa
gtgaaatttaaagatttaggtttattaattatcgatgaagaacataaattcggagtttct
gtaaaagataaattaaaaactttaaaatcaaatattgatacgctgaccttgactgcaacg
ccgattccgagaactttacagttttcgttgatggctgcaagagatctatctgtaattaaa
acaccaccgccaaacagacagcctgtggaaacgcatatggttggttttagtgaagaaata
atccgagatgcagtttcttatgaattgcagcgtgacggacaggtttattttattaacaac
agagttgaaaatcttaaagatattgcggggttgattcaaagattggttcctgatgcgaga
gtaataaccggtcacggacaaatggaagggaaacagcttgaaagaaatgttcttgacttt
atggaagggaaatatgatgttttggttgccacaactattgtagaaagtggggtagacgtt
ccgaatgcgaataccatgttcatcaatgatgcgcaacgtttcgggatggcagatcttcac
cagatgagaggtcgtgtcgggcgaagtaaccgaaaagctttctgttatctgattacgccg
cctttggatatggtaacttctgatgcaagaaaaaggctggaagcgattgaacagttttca
gatttgggaagtggttttcagatagcgatgaaggatttggaaattcgtggtgcgggagat
ttgttaggcggtgaacaaagcgggttcattaatgaaatgggctttgaaacctatcaaaag
atgatgcaggaagctcttgaagaactaaaagacgataaagattttgaaaatctgtttgaa
aatgaagcagaccgacaaaaattatttaaatctgtaaaagaagtcaatattgatactgat
cttgaactgatgctgccggattcttacatctcaaccacagaagaaagattattgctttac
caaaaactggctgaaattgataatgaaattgaccttcagaaatttgaatctgaattgaca
gaccgttttggaacattaccttctgaagctgttaacttattgaaaagtgttgccttaaaa
tggcttgcggcagatattggtttcgaaaaaatcgtcatgaaaaacggaattttcttagga
tatttcccgaataatcctcaggataaattttaccagactgataaattcagacatattatc
agttatttaacgcaaaatccatcgcaggcgcaattgaaagagaagattggaaaagaaggt
aatcagctgatgatgagaaaagatggggtgcaaaatgtagatgaggtgaatttattgttg
aagtcgattttgtctctttaa
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