Curtobacterium sp. BH-2-1-1: BJK06_03855
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Entry
BJK06_03855 CDS
T04562
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cub
Curtobacterium sp. BH-2-1-1
Pathway
cub03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BJK06_03855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cub03400
]
BJK06_03855
Enzymes [BR:
cub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BJK06_03855
DNA repair and recombination proteins [BR:
cub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BJK06_03855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
RecG_dom3_C
MFD_D3
DUF3638
Motif
Other DBs
NCBI-ProteinID:
AOX65015
LinkDB
All DBs
Position
complement(842641..846252)
Genome browser
AA seq
1203 aa
AA seq
DB search
MTISGIIPALSRASAFDRVLRAAPRDADFSVVDGLRVPLLGALLAERTGPQCVFVITATG
REAEAVRASVGSYLPDAEVLEFPAWETLPHERLSPSAQTVGTRIATLRKLAAWQDAPAAE
RSTTVVVASVRAALQPIAGNLTSLAPIALRTESRGNDLGTIAGQLVDMAYARVDLVTRRG
EFAVRGGILDVFPPTADHPVRVDFFGDEIEAIKAFSVADQRTTDDDLGSVELTASRELLL
SDDVRQRAREMLHEFPNLSQMLAKIAEGIPVEGMESLAPALVQDLVPVTNYLPDDSVIAV
FSPERVSGRAHSLAETNTEFLQAAWSAAVAGAQAPIDLDAGNFLTVQQLKNGRGQRTWWT
VSPFDSGLDEGDAERVLTDAEAVAEAGDYIRVRAEAIPSFAGSADGAIAHVKQLTDDGWA
VVVTAEGQGLVERAVQVLADAGVAARAETVTAPPEPGVAVVTTATVEHGFATPDPRIAVL
SEAEFYGRSVQQGARTVKKLASRRKNVVDPLQLKPGDVVVHATHGIGKFVELVSREVSSG
GRNAVNTQREYLVLEYAPSKRGYPGDKLFVPTDQLDQLSRYVGGESPTLSKMGGSDWASA
KSKARKAVRDIAVDLVKLYSARMASKGHAFGPDTPWQRELEEAFPFAETADQLTTIDEIK
RDMERPIPMDRLLSGDVGYGKTEVAIRAAFKAVQDGKQVAVLVPTTLLVRQHMETFQERF
AGFPVHLRALSRFQTEKESKETIAGLADGTVDIVIGTHRILSQGIQFKDVGLVIIDEEQR
FGVEHKDQLKKLKTNVDVLAMSATPIPRSLEMAVTGIREMSTLATPPEDRHPILTFVGPQ
SDLQVAAAIRRELLREGQVFYVHNRVKDIQSVAAHLAEIVPDARIAVAHGQMSESTLEQV
MVDFWERRFDVLVSTTIIETGLDIANANTLIIDKADKYGLSQLHQLRGRVGRGRERGYAY
FLYDAEKPLSETAQDRLETIAANNELGAGMQVAMKDLELRGAGNLLGGEQSGHIAGVGFD
LYLRMIGEAVSQFRGDVAEGQTELRLEIPVDAHIPDDYVESERLRLEAYQKLSAASAPAA
QAEGIDMVLDELTDRYGQPPQAVLTLVEVSRLRRMAQQVGLSDVVVMGSNLRVAGKELAD
SAQVRLKRMFPGARWFPQQDAASIPLPKPHGETLPDAALIQWVESILTAVYGASKAPAET
PAA
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
gtgacgatctcgggcatcatccctgcgctctcgcgcgcctccgcgttcgatcgcgtcctc
cgtgccgcaccccgtgacgccgacttctcggtcgtcgacggtctgcgcgtgccactgctc
ggcgccctgctggccgaacgcaccgggccgcagtgcgtcttcgtgatcacggccaccggg
cgcgaggccgaggccgtccgcgcatcggtcggcagctacctccccgatgccgaggtcctc
gagttccccgcgtgggagaccctgccgcacgaacggctcagcccgagcgcgcagaccgtc
ggcacgcgcatcgcgaccctccggaagctcgccgcgtggcaggacgcccccgcggccgag
cgcagcacgaccgtggtggtggcgagcgtccgggcggcgctgcagccgatcgcgggcaac
ctcacctccctcgcgccgatcgccctccgcaccgagtcccgcggcaacgacctcggcacc
atcgccgggcagctcgtggacatggcgtacgcccgggtcgacctcgtcacccgccgtggc
gagttcgccgtgcgcggcggcatcctcgacgtcttcccgccgacggccgaccacccggtc
cgcgtcgacttcttcggcgacgagatcgaggcgatcaaggccttctccgtcgccgaccag
cgcaccaccgacgacgacctcggctcggtcgagctgacggcctcgcgcgaactcctgctg
agcgacgacgtccggcagcgggcgcgcgagatgctgcacgagttcccgaacctctcccag
atgctcgcgaagatcgccgaggggatcccggtcgagggcatggagtccctcgcccccgcg
ctcgtgcaggacctcgtgccggtcacgaactacctgccggacgactccgtcatcgcggtg
ttctcgcccgagcgggtcagcggccgcgcgcacagcctcgccgagacgaacaccgagttc
ctgcaggccgcctggagcgccgcggtcgccggtgcgcaggcaccgatcgacctcgacgcc
ggcaacttcctcaccgtccagcagctcaagaacggccgtgggcagcgcacctggtggacg
gtctccccgttcgactccgggctggacgagggcgacgccgagcgcgtgctcaccgacgcc
gaagccgtggccgaggcgggcgactacatccgcgtccgggccgaggcgatcccgagcttc
gccggcagcgcggacggtgcgatcgcgcacgtgaagcagctcaccgacgacgggtgggcc
gtcgtggtgaccgccgaaggccaggggctggtcgagcgggcggtgcaggtgctcgccgac
gcgggggtcgccgcccgtgccgaaaccgtcaccgcgcctcccgagcccggcgtcgccgtc
gtgacgaccgccaccgtcgagcacggcttcgccaccccggatccgcgcatcgcggtcctc
agcgaggccgagttctacggccgcagcgtccagcagggcgcgcgcaccgtcaagaagctc
gcgagtcggcgcaagaacgtcgtcgacccgctgcagctcaagcccggggacgtcgtcgtg
cacgccacgcacgggatcggcaagttcgtcgagctcgtctcgcgcgaggtgagctccggc
ggccgcaacgcggtgaacacccagcgcgagtacctcgtgctcgagtacgcgccgtcgaag
cgcgggtacccgggcgacaagctcttcgtgccgaccgaccagctcgaccagctctcgcgg
tacgtcggcggcgagtccccgaccctgtcgaagatgggcggctcggactgggcctcggcg
aagtcgaaggcgcgcaaggccgtccgcgacatcgccgtcgacctcgtgaagctctactcc
gcgcggatggcgtcgaagggccacgccttcggcccggacacgccgtggcagcgcgagctg
gaagaggcgttcccgttcgccgagacggccgaccagctcaccaccatcgacgagatcaag
cgcgacatggagcggccgatcccgatggaccgtctgctctccggcgacgtcggctacggc
aagaccgaggtcgcgatccgtgccgcgttcaaggccgtgcaggacggcaagcaggtcgcc
gtgctcgtccccacgacgctgctcgtgcgccagcacatggagaccttccaggagcgcttc
gccggcttccccgtgcacctgcgcgccctcagccggttccagaccgagaaggagtcgaag
gagaccatcgcgggcctcgccgacggcacggtcgacatcgtcatcggcacccaccggatc
ctgtcgcagggcatccagttcaaggacgtgggcctggtcatcatcgacgaggaacagcgg
ttcggcgtcgagcacaaggaccagctcaagaagctcaagacgaacgtcgacgtcctggcg
atgtccgcgacgccgatcccgcgctcgctcgagatggccgtcaccggcatccgcgagatg
tccaccctcgccaccccacccgaggaccgccacccgatcctcaccttcgtcgggccgcag
tccgacctgcaggtcgccgccgccatccgccgcgagctcctgcgcgaggggcaggtgttc
tacgtgcacaaccgcgtgaaggacatccagtccgtcgccgcgcacctcgccgagatcgtc
ccggacgcccgcatcgccgtcgcgcacgggcagatgtccgagtcgacgctcgagcaggtg
atggtcgacttctgggagcgccggttcgacgtcctcgtctcgaccaccatcatcgagacc
ggcctcgacatcgcgaacgcgaacacgctcatcatcgacaaggcggacaagtacgggttg
tcgcagctgcaccagctgcgcggacgtgtgggccgagggcgtgagcgcgggtacgcgtac
ttcctctacgacgccgagaagcccctgtccgagaccgcacaggaccgcctcgagaccatc
gccgcgaacaacgagctcggcgcgggcatgcaggtcgccatgaaggacctcgagctccgc
ggggcgggcaacctgctcggcggggagcagtccggccacatcgcgggcgtcgggttcgac
ctctacctgcgcatgatcggcgaggccgtctcgcagttccgcggcgacgtcgccgagggg
cagaccgagctccggctcgagatccccgtcgacgcgcacatcccggacgactacgtcgag
tccgagcggctccggctcgaggcgtaccagaagctctccgccgcctccgcccccgcggcc
caggccgaggggatcgacatggtcctcgacgagctcaccgaccggtacggccagccgccg
caggccgtgctcaccctggtcgaggtctcgcgccttcgccggatggcgcagcaggtcggg
ctctccgacgtcgtcgtgatggggtcgaacctgcgcgtcgcgggcaaggagctcgccgac
tcggcgcaggtgcggctcaagcggatgttcccgggcgcccggtggttcccgcagcaggac
gcggcgagcatcccgctgccgaagccgcacggtgagaccctgccggacgctgcgctcatc
cagtgggtggagagcatcctgacggccgtgtacggggcgtcgaaggcgccggcggagacg
ccggcggcgtag
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