Cuculus canorus (common cuckoo): 104056673
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Entry
104056673 CDS
T08597
Symbol
UPF3A
Name
(RefSeq) regulator of nonsense transcripts 3A
KO
K14328
regulator of nonsense transcripts 3
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03013
Nucleocytoplasmic transport
cuca03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104056673 (UPF3A)
03015 mRNA surveillance pathway
104056673 (UPF3A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cuca03019
]
104056673 (UPF3A)
Messenger RNA biogenesis [BR:
cuca03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104056673 (UPF3A)
mRNA cycle factors
P-body specific factors
104056673 (UPF3A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
104056673
NCBI-ProteinID:
XP_009556246
LinkDB
All DBs
Position
Unknown
AA seq
432 aa
AA seq
DB search
MVPSVSKSKKVVIRRLPPCLTKEQLEEQLHPLPAYDYFEFCTADPSLYPHLYSRAYINFR
NPEDILLFRDRFDGYVFIDNKGLEYPAVVEFAPFQKISKKKLKKKDAKAGSIEDDPEYRK
FLESYCADEEKICANPEILLGEIEAKTRELIARRTTPLLEYIKNRKLEKQRIREEKREER
RRRELEKKRLREEEKRKRREEERRKRKEVEKQKKISEKEIRIKLLKKPEKGDELTSEKNK
EKGEEADIEENKWDKSPGSGSLKSKSLEGSLKEVKEKSQNDSDKEQRDLERRFREKEPER
QRYRLDDGRKHRAHYEVDKFVRRNEEELKWGKGYNQDRGKKGNYNYSFTVEAVDKLGKED
KCDDMASKKERIRNKDRPAMQLYQPGARIRTHTGSTSKTYDCSGKSFEDALDKKYEADNS
AGGGSEKSEEVE
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atggttccatctgtcagcaagtccaagaaggtagttattcgacggcttcctccttgccta
actaaggagcaactggaggaacagctacatcctctacctgcctatgattattttgagttt
tgcactgctgatcccagcctttatcctcatctctactcaagagcatacattaactttaga
aaccctgaggacatccttctttttagagatcgctttgatggctatgtcttcattgataat
aaaggtctggagtatcctgcggtggttgaatttgctccattccagaagatttcaaagaag
aagctgaagaagaaagatgccaaagctgggagcattgaagatgatccagaatataggaaa
tttttagagagttattgtgctgatgaagagaaaatctgtgccaatcctgagattcttttg
ggagagattgaggccaaaacaagggaactcattgctagaagaacaacacctcttttggaa
tatattaaaaatagaaaattagaaaagcagagaatacgagaagaaaaaagagaagaacga
aggcggagagaattggagaagaagcgcctgcgggaggaagagaagaggaagcgcagagaa
gaagaaagacgtaaaagaaaagaagtagagaagcaaaagaagatttctgaaaaagaaata
aggatcaagcttcttaagaagcctgagaaaggagatgagctgaccagtgaaaagaacaaa
gagaaaggtgaagaagctgacattgaagaaaacaagtgggataaatcacctggatctggg
agtttaaaatccaaatcattggagggttcactaaaagaagttaaggaaaagtcacaaaat
gatagtgacaaagagcaaagagatttggagagaagatttcgagaaaaagaacctgaaaga
caaaggtatcgattggatgatggcagaaagcatagagctcactatgaggttgacaagttt
gtgagaaggaatgaagaagagctgaaatgggggaaaggatacaaccaagacagaggaaag
aaagggaactacaactacagcttcactgtggaggcagtagacaaactgggtaaagaggac
aagtgtgatgacatggcatccaaaaaggagcgcataagaaataaggatcgcccagccatg
cagttgtaccagccaggagctcgcattcggacacatacgggatctacgagtaaaacctat
gactgcagtgggaaatcctttgaagatgctcttgataagaagtatgaggcagataactca
gctggcggcggttctgagaagagtgaagaagtggaataa
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