Cuculus canorus (common cuckoo): 104064056
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Entry
104064056 CDS
T08597
Symbol
UPF3B
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03013
Nucleocytoplasmic transport
cuca03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104064056 (UPF3B)
03015 mRNA surveillance pathway
104064056 (UPF3B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cuca03019
]
104064056 (UPF3B)
Messenger RNA biogenesis [BR:
cuca03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104064056 (UPF3B)
mRNA cycle factors
P-body specific factors
104064056 (UPF3B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
104064056
NCBI-ProteinID:
XP_009564641
LinkDB
All DBs
Position
Unknown
AA seq
452 aa
AA seq
DB search
MQGVVVGRGSRRRTVPPPVCPHRPDHPAPQVVIRRLPPSLTKEQLEEHLQPLPEHDYFEF
FANDSSLYPHMFSRAYINFKNQEDIVLFRDRFDGYVFVDHKGQEYAAIVEFAPFQKAAKK
KSKKKDAKTGTIEDDPEYKKFLESYSADDEKLTSTPETLLEEIEARNKELIAKKTTPLLN
FLKNKQRLREEKREERRRRELERKRQREEERRKWKEEERRKRKEAEKLKKVDRCPEKERD
RSKEEPKIKLLKKPEKDEKDLEKKEKSKKLERETLREEKNASSASAKRSDGETKEEKAKK
SEDECVKDYRDRDRDFERDREYERAQREKLRRQEEERRRQKERFEKEKVFRRKEEEVKKE
RDLLREKAKKSDLTDFTGSMDKSEKVTKDDKKEDTIKRDRIRNKDRPAMQLYQPGARSRS
RLCQYEDNAAKPTDQGADKKPESETSNAKEEE
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgcagggagttgtagtcgggcggggcagccggaggaggactgtgccccctcctgtctgt
ccccaccgccctgaccacccggccccgcaggtggtgatccgccggctgccgcccagcctg
acgaaggagcagctggaggagcacctgcagcccctgcccgagcacgactacttcgagttc
ttcgccaatgactccagcttgtacccacacatgttctcaagagcctacatcaactttaag
aaccaggaagacatcgtcctcttcagggatcgctttgacggctacgtttttgtcgatcac
aaaggtcaggaatatgctgccatagttgagtttgcacctttccaaaaagctgcaaaaaag
aagagtaagaaaaaggatgccaaaacaggaactattgaagatgatccggagtacaagaag
tttttggaaagttacagtgcagatgatgaaaaattaacctccactcctgaaactttgttg
gaggaaatagaggcaagaaacaaagagctgatagctaaaaagactactcctctattgaac
ttcttgaaaaataaacagagactgagagaagaaaaaagagaggagaggaggaggagagaa
ttggaaagaaaaagacaaagagaagaggaaagaagaaaatggaaggaggaggagagaagg
aagagaaaagaagcagaaaaactgaagaaggtagacagatgcccagaaaaagaaagagac
agatcaaaagaagaaccaaagattaagctacttaagaagcctgaaaaagatgaaaaagac
ttggagaaaaaagaaaaatccaagaaactggaaagagaaactctgagggaggaaaaaaat
gcgagtagtgcatctgccaaacgatctgatggggagacaaaagaagagaaggcaaaaaaa
tcagaagatgagtgtgtaaaggactacagggaccgagatagagattttgaaagagacaga
gaatatgagagagcacagagagagaaactgagacgccaggaagaggagcgtcggaggcag
aaagaacgctttgagaaagagaaggtttttagaagaaaagaagaagaggtgaaaaaggag
agagacttactcagagaaaaggcaaagaaaagtgatctcacagactttaccggcagcatg
gacaaatctgagaaagtaaccaaagacgataaaaaagaggatacgattaagagggatcgt
atcagaaacaaggatcgtccagcaatgcagctgtaccagccaggagccagaagccgaagc
aggttgtgtcagtatgaagacaatgctgcaaagcccacggatcagggagcagataagaag
ccagagagtgagaccagtaatgcgaaggaagaggagtga
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