Cuculus canorus (common cuckoo): 104066858
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Entry
104066858 CDS
T08597
Symbol
RC3H2
Name
(RefSeq) roquin-2
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
cuca
Cuculus canorus (common cuckoo)
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cuca03000
]
104066858 (RC3H2)
04121 Ubiquitin system [BR:
cuca04121
]
104066858 (RC3H2)
Transcription factors [BR:
cuca03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
104066858 (RC3H2)
Ubiquitin system [BR:
cuca04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
104066858 (RC3H2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-CCCH
zf-RING_UBOX
zf-RING_2
zf-CCCH_4
zf-C3HC4_3
Prok-RING_4
zf-C3HC4
zf_CCCH_4
zf-C3HC4_4
zf-C3HC4_2
Xin
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
104066858
NCBI-ProteinID:
XP_009567831
LinkDB
All DBs
Position
Unknown
AA seq
1195 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD
IDVLPVNFALLQLVGAQVPDHQTVKLSNVGENKHYEVAKKCVEDLALYLKPLSGGKGVAS
LNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELLANI
DPNPDAASPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCRDLR
QQGGCPRGTNCTFAHSQEELEKYRLRNKKISATVRTFPLLNKVGVNSTISTTTGNVISVI
GSPEAAGKMVPSTNGIANLESGVPQLIPRCAETSLRALESTKKGGKTGASGQNVSGSPTE
SLPENKIGSPPKTPVSQAAATSAGPPNIGTEVNSVPPKSSPFVPRVPVYPPHSDSVQYFQ
DPRTQLSYEVPQYPQTGYYPPPPTVPAGVAPCVPRFVRSNNVPESSLPPASVPYADHYST
FPPRDRLNSPYQPPPPQPYGPVPPVPSGMYAPVYDSRRIWRPQMYPRDDIIRSNSLPPMD
VMHSSVYQTSLRERYNSLDGYYSVACQPPNEQRTVPLPREPCGHLKTGYDEQLRRKPEQW
AQYHTQKTPLVPSTLPMATPSPTPPSPLFSVDFSTEFSESVSDLSGTKFEEDHLSHYSPW
SCGTIGSCINAIDSEPKDVIANSNAVLMDLDSGDVKRRVHLFETQRRAKEEDPIIPFSDG
PIISKWGAISRSSRTGYHTTDPIQATASQGSATKPISVSDYVPYVNAVDSRWSAYGSDST
SSARYAERDRFIVTDLSGHRKHSSTGDLLSIELQQAKSNSLLLQREANALAMQQKWNSLD
EGSRLTLNLLSKEIDLRNGEVKKGTDYTEDSADTKPDRDIELELSALDTDEPDGQGEQIE
EILDIQLGISAQDDQLLNGTTVENGHPLKQHPKESMEQKRQSLGEDLVILEEQKTILPVT
SCFSQPITTSVSNASCLPISTSVSVGSLILKTAHIMSEDKNDFLKPVANGRMVNS
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgcaggcagctcagtggacagaatttctgtcctgcccaatctgctacaatgag
tttgatgagaatgtgcacaaacccatcagcttaggttgctctcacactgtctgtaagacc
tgcctgaacaagcttcatcgcaaggcatgtcctttcgaccagactgccatcaatacagac
atcgatgtgcttcctgtgaactttgcactcctccagttagttggagcccaggtacctgat
catcagacagtaaagctgagtaatgtaggagagaacaaacattatgaagtagcaaagaaa
tgtgttgaggatttggcactctacttaaagccattaagtggaggaaaaggtgttgcaagc
ttgaatcagagtgcgctgagccgtcccatgcaaaggaagcttgtgactctggtgaattgt
cagctggtggaggaagagggtcgggttagggctatgagagcagctcgatctctgggagag
agaaccgttacagaactgatcttgcagcaccaaaatcctcagcagctttctgccaatctt
tgggctgctgtcagggcacgaggatgccagtttctaggaccagctatgcaagaggaggca
ctgaaacttgttttactggcactggaagatggctctgcactctctagaaaagttctggta
ctttttgttgtacaaaggctagaaccaagatttcctcaggcctctaaaacgagcattggt
catgttgtgcagctactgtatagagcatcatgctttaaggtcactaaaagggatgaagat
tcttctctgatgcaacttaaagaagaatttcggagttatgaggctttgcggagagaacat
gatgcccaaattgttcacattgccatggaagcaggacttcggatatcaccagaacaatgg
tcttcccttctttatggtgacttggcacataaatcacacatgcaatccattattgacaag
ctccaatctccagaatcttttgcaaagagtgtacaagaattgacaattgtcttgcagcgc
acaggggatcctgcaaacttaaacaggctgaggcctcatttagagctgctggcaaacata
gatccaaatccagatgcagcatctccaacatgggagcagctggaaaatgcaatggtcgct
gtgaagactgtggtacatgggctggtggatttcattcagaattacagtagaaaaggccat
gaaactccacagccacaaccaaacagcaaatataaaacaagtatgtgccgagaccttcga
cagcaagggggatgcccacgaggaacaaactgtacattcgctcattctcaggaagagctt
gaaaagtatcgcttgaggaacaaaaaaatcagtgcaacagtgagaacattcccccttcta
aataaagttggcgtaaacagcaccatctcaaccacaacaggaaacgtcatttctgtcata
ggaagcccagaagcagcaggaaagatggtgccaagtactaatggaatagctaatctagaa
agtggtgttccccagttgatccctcgctgtgcagagacatccttgagagctttggagagc
accaagaagggagggaagactggagccagtggccagaatgtttctggatcacctacagaa
tcactacctgaaaataaaattggttctccaccgaagactcctgtaagccaggcagcagct
acctcagctggtcctcctaatattggaacagaagttaattctgtacctccgaaatccagc
ccgtttgttcccagagtaccagtctaccctccgcattctgatagtgttcaatatttccaa
gatcccaggactcagctgtcatatgaagttccacagtacccgcaaacgggatattatcca
ccacctccaacagtaccagctggtgtggctccctgtgttcctcgctttgtgaggtccaat
aacgttccagaatcctccctcccacctgcttccgtgccatatgccgatcattacagtaca
tttccccctcgagatcgactgaattctccttaccaacctcctcctccgcagccgtatgga
ccagttcctcctgtcccttctggaatgtatgctccagtttatgacagcaggcgcatctgg
cgcccacagatgtacccacgggatgatattattaggagcaattctttacctcccatggat
gtgatgcactcatctgtctatcagacatcattgcgtgagagatacaactctttggatggg
tattactctgtggcttgtcaacctccaaacgaacagaggacggtgcctttaccaagggag
ccttgtggtcatttgaagactggttacgatgagcagttaagaaggaagccagagcaatgg
gcgcagtaccacacgcagaaaactcctctggtaccgtctacccttcctatggcaacacca
tctccaacaccaccttctcctctcttcagtgtagatttcagcacagagttctctgagagt
gtcagtgatctgagtggaactaaatttgaggaagaccatctctctcactactcgccgtgg
tcttgtggcactattggttcttgtataaatgctatcgactccgagcccaaggatgtgatt
gccaattcaaatgctgtgttaatggatttggacagcggagatgttaaaaggagagtgcat
ttatttgaaactcagcgaagggcaaaggaagaagatcctataattccatttagcgatgga
ccgatcatctccaagtggggtgcaatctctaggtcatcccgcacgggttatcacacaaca
gatcctattcaggccactgcttcccaaggaagtgctactaagcccatcagtgtgtcagat
tacgtcccttacgtcaatgctgttgactcaagatggagtgcctatggctcagattcaact
tcatcagcacgttatgcagagcgcgacaggttcatagttacagatttgtctggtcacagg
aagcattccagcactggagatctattgagtattgaattacagcaggccaaaagtaattca
ttattacttcagagagaggcgaacgcgctagccatgcagcagaagtggaattctctagat
gaaggcagtcgtcttaccttaaatcttttaagcaaggaaattgatttgaggaatggtgag
gtaaagaaagggactgattatactgaggactctgcagacacaaagccagatcgagacatt
gaattggagctgtcagcccttgatacggatgaacctgatgggcaaggtgaacaaatagaa
gagattctggatatacagctaggtattagtgctcaagatgatcagctgctcaatggaaca
actgtagagaatgggcatccactaaagcagcacccgaaagaatctatggaacagaagaga
caaagtttaggtgaagaccttgtgattctggaggagcagaaaacaatcctgcccgtaact
tcttgcttcagtcagccgatcacaacatctgttagcaatgcaagctgcctgcccatcagc
acatcagtcagtgttggcagcctcattttgaaaactgctcacattatgtctgaggataaa
aatgactttttaaagcctgttgcaaatggcaggatggttaacagctga
DBGET
integrated database retrieval system
