Cheilinus undulatus (humphead wrasse): 121525817
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Entry
121525817 CDS
T07473
Symbol
pabpc4
Name
(RefSeq) polyadenylate-binding protein 4
KO
K13126
polyadenylate-binding protein
Organism
cud
Cheilinus undulatus (humphead wrasse)
Pathway
cud03015
mRNA surveillance pathway
cud03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cud00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121525817 (pabpc4)
09123 Folding, sorting and degradation
03018 RNA degradation
121525817 (pabpc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cud03019
]
121525817 (pabpc4)
03041 Spliceosome [BR:
cud03041
]
121525817 (pabpc4)
Messenger RNA biogenesis [BR:
cud03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
121525817 (pabpc4)
mRNA cycle factors
Stress granule specific factors
121525817 (pabpc4)
Spliceosome [BR:
cud03041
]
Complex C
Other components
Complex C specific factors
121525817 (pabpc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_5
RRM_7
RRM_occluded
ApbA_C
Motif
Other DBs
NCBI-GeneID:
121525817
NCBI-ProteinID:
XP_041667895
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All DBs
Position
18:complement(30755086..30767658)
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AA seq
627 aa
AA seq
DB search
MNTAATGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNF
SQPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTF
SAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKER
EAELGAKAKEFTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYE
KHEDANKAVEDMNGTELNGKTVFVGRAQKKMERQAELKRKFEMLKQERISRYQGVNLYIK
NLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVG
SKPLYVALAQRKEERKAHLTNQYMQRIAGMRAMPANAIINQFQPTSGYFMPAVPQAQNRT
TYYAPNQLAQMRPNPRWQQQGGRGQGGFQGIPSSLRQPGPRANLRHMSPGSGTQGPRAAG
QAMAPRPSMGVPGGPRAMPPYKYATGVRNPNPQVVQPIALQQTQPAVHVQGQEPLTASML
AAAPPQEQKQMLGERLFPLIQAMHANLAGKITGMLLEIDNSELLHMLESHESLRSKVEEA
VAVLQAHQAKKDATQKVGGMATTAATS
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgaacacagcagcgacggggagttatccgatggcttctctctacgttggcgacctgcac
cccgacatcacggaggctatgctgtatgagaaattcagcccagccggaccggtgctctcc
attcgggtatgccgagacatgatcactcggcgatccctgggatacgcttatgtgaacttt
tcccagcctgctgacgctgagagagccctggacactatgaactttgacgtggtgaaggga
aagccaatcaggatcatgtggtcccaaagagacccctccctcaggaagtctggagtgggc
aacgtgttcatcaaaaaccttgacaagtctatcgacaacaaagctctgtatgacaccttc
tctgcctttggaaacatcctctcctgcaaggtggtgtgtgatgaaaatggctccaagggc
tatgcttttgtccactttgagacccaggatgctgctgaccgtgccattgaaaagatgaac
ggcatgcttctgaatgaccgcaaggtgtttgtgggtcgtttcaaatctcgcaaagaacgg
gaggctgaacttggtgccaaagctaaagagtttaccaatgtttatatcaagaactttggc
gatgatatggatgatgagcgactgaaggagctgttcgacaaatatggtaaaacactcagt
gtaaaagtgatgacagaccccaccggcaaatcaagaggctttggatttgtgagctacgag
aaacatgaggacgccaacaaggctgtagaggatatgaatggcacagagctcaatggcaag
actgtgtttgtgggccgggctcagaagaagatggagcggcaggcagagctgaagaggaag
tttgaaatgctcaaacaagagaggatcagtcgttatcagggtgttaatctttacatcaaa
aacctggatgacaccatagacgatgagaaactgcgcaaagaattctctccattcggatcc
attacaagtgctaaggtgatgctcgaggagggtcgttccaaaggcttcggttttgtctgc
ttctcctcgcctgaagaggccaccaaggctgtgactgagatgaatgggcgcattgtcggc
tctaaacccctctacgtggctctggctcagcgcaaagaggagcgcaaagcacatctgacc
aaccagtacatgcagcgtattgctggaatgagagccatgcctgcaaatgccattattaat
caattccagccaaccagcggctacttcatgccagctgtaccacaggcccagaataggact
acatattatgcacccaatcagctggcccaaatgagacccaaccccaggtggcagcaacaa
ggtggcagaggtcaaggaggtttccaaggcatacccagctcactgcgtcagccaggaccc
cgtgccaacctgaggcatatgtctcctggcagtggcacacagggaccccgagctgctggt
caggccatggctcctcgcccctctatgggagttcctggaggccctcgtgccatgcctcct
tacaagtacgcaactggcgtacgaaacccaaacccccaagttgtacaacctatcgcttta
cagcagactcagccagctgtgcacgttcaaggccaggagcctctaacagcttccatgctt
gctgctgcaccccctcaggaacagaagcagatgttaggtgagcgtcttttcccgctgatt
caggccatgcatgccaacctggcaggaaagatcactggcatgctgctggagattgataac
tcagaactgctgcacatgctggagtctcatgaatctttgcggtcaaaggtggaagaagct
gtcgccgtgctacaagcccaccaggcaaagaaagatgctactcaaaaagtgggcggcatg
gctactactgctgccacatcctga
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