Cupriavidus sp. KK10: KB879_16965 Help Entry KB879_16965       CDS       T08941                                  Symbol ligD Name (GenBank) DNA ligase D   KO K01971   bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] Organism cuk  Cupriavidus sp. KK10 Pathway cuk03450   Non-homologous end-joining Brite KEGG Orthology (KO) [BR:cuk00001]  09120 Genetic Information Processing   09124 Replication and repair    03450 Non-homologous end-joining     KB879_16965 (ligD)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:cuk03400]     KB879_16965 (ligD) Enzymes [BR:cuk01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      KB879_16965 (ligD) DNA repair and recombination proteins [BR:cuk03400]  Prokaryotic type   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     Two-component NHEJ DNA repair complex      KB879_16965 (ligD) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S Motif Other DBs NCBI-ProteinID:  QUN25889 LinkDB All DBs Position 3618655..3621393 Genome browser AA seq 912 aa AA seqDB search MAKTTRPTAPQDPGKRRALAKGAGKHTGKRASTARPAARGAPAAKAPAALDKYRRMRDFG ATPEPAGGAARTRGQPRTRASELSFVIQKHAARRLHYDFRLELGGTLKSWAVPKGPSLDP ADKRMAIHVEDHPLDYAGFEGVIPAGHYGAGTVIVWDRGTWLPVGDAEAGYRAGKLKFEL RGEKLHGHWTLVRMHGSRQKEQDAWLLIKERDETAVPASEFDVVEALPDSVLGGTQRKPA AKRAKTAQPPDEAAPDARSTARSLKPPRGAPRAALPLALAPQLATLVEQPPSDAQAWHYE IKFDGYRLLARIDGKDVRLFTRQGHDWTSKLRALARDVGTLGLPDGWLDGEIVVLDKHGA TDFQALQNAFDTARVEAIQYFVFDLPYFAGHDLRKVPLVERRALLRRIFAHNTSPRLQFS EDFEASPADMLEAACRMKLEGVIGKRADASYVSARTNTWIKLKCTLRQEFVVAGFTDPKG SRAGIGSLLLGVHDSGGRLRYAGNVGTGFDTRTLAALRTQLDALRTDSAPFESVPAGVKG HWVRPKLVAEVSFGSWTREGRVRHAVFHGLRTDKPARAVSVERPATPAAKGKPAPKAAKH TGTQPKAGTAAKRATAAGGKVAISHAGRVIDTASGLTKGDLVRYYERAAPLMLPHLRGRP IAMVRAPSGVGGEQFFQRHGDTLRVDGLNVLDPGLWPGHPALLEIASAEALVSAAQLNVV EFHTWNASKRSIDRPNRIVFDLDPGEGVPWAQMQEAATLMKALLDELGLASFLKTSGGKG LHVVVPITPRAGWDEVKAFAHDVVRHVAKTIPQRFVAKSGPRNRVGKIFIDYLRNGVGAT TAAAFSARARPGLGVSMPVWWEELDTLQGAAQWTVANAGPRLDTLAADDPWADYADTRQA ITRAAARLARTG NT seq 2739 nt NT seq  +upstreamnt  +downstreamnt atggccaagaccacgcgaccgacagcgccacaggatccaggcaaacgccgcgccttagca aaaggcgccggcaagcatacgggcaagcgcgccagcacggcgcgcccggcggcacgcggc gcgccagccgccaaggcccccgccgcactcgataaataccgccgcatgcgcgacttcggc gccacgccggagcccgccggcggcgccgcgcgcacccgcggccagccgcgcacgcgcgcc agcgaactgtccttcgtgatccagaagcacgcggcgcgtcggctgcactatgactttcgc cttgagcttggcggcacgctgaaaagctgggccgtgcccaagggcccgagcctggaccct gccgacaagcgcatggccatccatgtcgaggaccacccgctggactacgccggcttcgag ggcgtgatcccggccggccactacggtgccggcacggtcatcgtctgggaccgcggcacc tggttgccggtgggcgatgccgaggccggctaccgcgccggcaagctgaagttcgagctg cgcggtgaaaagctgcacggccactggaccctggtgcgcatgcacggcagccggcagaag gagcaggacgcctggctgctgatcaaggagcgcgacgagaccgccgtgccggcatcggag ttcgacgtggtcgaggccttgccggacagcgtgctgggcggcacgcagcgcaagcctgcg gcaaagcgcgcaaagaccgcccagccgcctgacgaagccgcaccagatgcgcgcagcacg gcgaggtccctgaagccgccgcgcggcgcgccgcgcgcggccttgccgctggcgctggcg ccgcagctggccacgctggtggaacagcctccgtcggacgcgcaggcctggcattacgag atcaagttcgacggctaccggctactggcccgcatcgacggcaaggatgtgcgcctgttc acgcgccagggccacgactggaccagcaagctgcgtgcgctggcgcgcgacgtcggcacc ctgggcctgcccgacggctggctcgatggcgagatcgtggtgctcgacaagcatggcgcg accgacttccaggcgctgcagaacgccttcgataccgcgcgcgtcgaggccatccagtac ttcgtgttcgacctgccctactttgccggccatgacctgcgcaaggtgccgctggtggag cgccgcgccctgctgcgccggatcttcgcgcacaacacctcgccgcgcctgcagttcagc gaggacttcgaggccagccctgccgacatgctagaggcagcctgccgcatgaagcttgaa ggcgtgatcggcaagcgcgccgacgccagctatgtcagcgcgcgcaccaatacgtggatc aagctgaaatgcaccttgcgccaggagttcgtggtggcgggtttcaccgacccgaagggc agtcgcgccggcatcggctcattgctgcttggcgtgcacgacagcggcgggcggctgcgc tacgcgggcaatgtcggcaccggcttcgacacgcgcaccctggctgcgctgcgcacgcaa ctggacgcgttgcgcaccgattccgcgccttttgagagcgtgccggcaggcgtgaaaggg cactgggtgcggccaaagctggtggccgaagtctcgttcggcagctggacccgcgaaggc cgcgtgcgccatgccgtcttccacggcctgcgcaccgacaagcccgcgcgcgcggtgtcg gtggagcggccggcaacgccggcagccaagggcaagccggcgccaaaagcggcaaagcac accgggacacagccgaaggccggcaccgccgcaaagcgtgcaaccgccgccggcggcaaa gtcgcgatcagccatgccgggcgcgtcatcgacacagcatccggcctgaccaagggcgac ctggtgcgctactacgaacgcgccgcaccactgatgttgccgcacctgcgcgggcgtccg atcgcgatggtgcgcgcgccgtcgggcgtgggcggcgagcagttcttccagcgccatggc gacacgctgcgggtggacggcctcaacgtgcttgatccgggcctgtggcccgggcatccc gcgctgctggaaatcgcgtcagccgaagcgctggtgtccgcggcacagctcaacgtggtg gagttccacacctggaacgccagcaaacgcagcatcgaccgccccaaccggatcgtcttc gacctggacccgggcgaaggcgtgccctgggcacaaatgcaggaagccgccacgctgatg aaggcgctgctcgatgaactcggcctcgccagcttcctgaagaccagcggcggcaagggg ctgcacgtggtggtgccgatcacgccgcgcgcgggctgggacgaggtgaaggcgttcgcg catgacgtggtgcgccatgtcgccaagaccattccgcagcgcttcgtggccaagagcggg ccacgcaaccgcgttggcaagattttcatcgattacctgcgcaatggcgtcggtgccacc acagcggcggcattctcggcgcgggcacgcccggggctgggcgtgtcgatgccggtgtgg tgggaagaactcgataccctgcaaggcgcggcgcagtggaccgtcgccaatgcgggccca aggctcgacaccctggccgccgacgacccatgggcggactacgccgacacccggcaggcg atcacgcgcgccgctgcgcgactggctcgcaccggctag

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