Cupriavidus malaysiensis: BKK80_26310
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Entry
BKK80_26310 CDS
T04978
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cup
Cupriavidus malaysiensis
Pathway
cup03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cup00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BKK80_26310 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cup03400
]
BKK80_26310 (ligD)
Enzymes [BR:
cup01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BKK80_26310 (ligD)
DNA repair and recombination proteins [BR:
cup03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BKK80_26310 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AOZ09310
LinkDB
All DBs
Position
2:1515017..1517656
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AA seq
879 aa
AA seq
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MARTIRQAPATAPGVAAKAQQATGKRLQDALAPYRRRRDFRTTPEPRDEAAARPRRVAGR
HGRALAFVVQKHAARRLHYDFRLELDGTLKSWAVPKGPSLDPADKRMAVHVEDHPVDYAE
FEGVIPPGQYGAGTVIVWDRGAWIPEGDPRAAYRAGKLTFELRGEKLRGHWTLVRMHGNR
QKDQDAWLLIKGRDEASVPITELDVVEAMPDSVLSGAAGRAPRKGASARKSGKPKAAEDV
PLPRGARAARLPLTLSPQLATLVETPPADEQDWRYEIKFDGYRLLARIDGKGVRLFTREG
NDWTSRLQAVARDVGALGLPDGWLDGEIVVLGKHGETDFQALQNAFRTSSVDAIQYFVFD
LPFYAGHDLRKVRLAQRRGLLRRLFERNTSPRLQFSEEFEAGPADMLDAACRMKLEGVIG
KRADSHYVSARSKTWIKLKCTLRQEFVIGGFTDPRGSRHGIGSLLLGVHASNGHLRYAGN
VGTGFDERMLSTLRAKLDGLVTDTTPFDAPPASLNVHWVRPKLVAEVSFGSWTRDGRVRH
SVFHGLRSDKPASAVILEQPAEVPAGPARPSHKHKHGHKPTAAGGRVAISHADRIVDQAT
GITKGELVRYYERVAPLMLPHLRDRPVALVRAPDGVGGEQFFQRHGDTLRVDGIHVLDAG
LWPGHPGLLEIVSAPALVAAAQLNAIEFHTWNASKRSIAKPNRIVFDLDPGKGLSWAHMR
EGAAMVKALLDELGLVSFLKTSGGKGLHVVVPVTPRAGWDEVKDFAHAVVLHIAKLIPQR
FVAKRGAERRVGKIFIDYLRNGIGATTVAAFSVRARPGLGLSIPVGWDELESLESAAEWS
VSNCGRRLEALASRDPWEAYARTRQSISRAAARLASAPG
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atggcgaggaccatccggcaggctccggcaacagcaccaggcgttgccgcgaaagcgcag
caagcgactggcaagcggctgcaggatgcgctcgcgccgtaccggcgccgacgggacttc
cggaccacgccggagccgcgcgacgaggctgcggcacgcccgcgccgcgtcgccggcagg
catggcagagcgcttgccttcgtggttcagaaacatgccgcgcgccgcctgcattacgac
ttccgcctcgaactggacggcacgctcaagagctgggccgttcccaaggggcccagcctc
gatccggccgacaagcgcatggcggtgcacgtggaagaccatccggtggactatgccgag
ttcgaaggcgtgattccgcccggccaatatggcgcgggcaccgtcatcgtatgggatcgt
ggcgcgtggatcccggagggcgacccgcgtgcggcctatcgtgccgggaagctgacgttc
gagttgcgcggggagaagctgcgcggccattggacgctggtccgcatgcacggcaacagg
cagaaggaccaggatgcatggctgctgatcaagggccgcgacgaagcctccgtgccgatc
acggaactcgatgtggtggaggccatgccagacagtgtcctctccggagcggcagggcga
gcgccgcgcaagggcgcatcagcgcggaagtcaggcaagccgaaggcagcagaggacgtg
cccctgcctcgcggcgccagggcggctcggttgccgctgacgctgtcgccacaactggca
acgctggtcgagacgccacccgccgatgagcaggactggcgctatgagatcaagttcgat
gggtatcggctgctggcgcggatcgacggcaagggcgtccgcctgttcacgcgcgagggc
aacgattggacttccaggctgcaagcggtggcgcgcgacgtcggggcgctcggcttgccc
gatggctggttggatggcgagatcgtggtgttgggcaagcatggagagaccgatttccag
gcgttgcagaacgccttcaggacttcgtccgtcgatgctatccagtacttcgtcttcgac
ctgcccttctacgccggccacgacttgcgcaaggtgcgcctggcgcagcgccgcgggctt
ctcaggcggctcttcgaacgcaatacttcgccgcgcctgcaattcagcgaggaattcgag
gctggcccggctgacatgctggacgcggcgtgccgcatgaagctggaaggcgtcatcggc
aaacgcgccgattcgcactacgtcagcgcgcgcagcaagacatggatcaagctgaaatgc
acgctgcggcaggagttcgtgattggaggcttcaccgaccccaggggcagccggcacggt
attggctccttgctgctgggcgtgcatgccagcaacgggcacctgcgctatgccggcaat
gtcggcacgggtttcgacgagcgcatgctcagtactttgcgcgccaagctggatgggctg
gtcactgacacgacaccattcgacgcgccgccggcatcgctgaacgtgcattgggtgcgc
ccgaaactggtggccgaagtttcgttcggttcgtggacgcgtgatgggcgggtgcggcat
tcggtttttcatggcctgcgcagtgacaagcccgcatctgccgtcattctcgaacagcct
gccgaggtccccgccgggccagcacggccttcacacaagcataagcacgggcacaagccg
actgccgcgggcgggagggtcgccatcagccacgcggatcgcatcgtcgaccaagccacg
ggaatcaccaaaggagaactcgtgcgctactacgagcgcgtggcgccgctgatgctgccg
cacctgcgtgaccgtccggtcgccctggtgcgcgctcccgacggcgtgggcggcgagcag
ttcttccagcgccatggcgacacgctgcgggtcgacggtatccatgttctggatgccggc
ctgtggccgggacatccgggattgctggagatcgtctcggcaccggcgctggtggcggct
gcacagctcaacgcgatcgagttccacacctggaatgccagcaaacgcagtatcgccaag
cccaaccgtatcgtcttcgacctggatcccggcaagggcttgtcctgggcgcatatgcgc
gagggcgcggcgatggtgaaggcgctgctcgatgaacttggactcgtcagcttcctcaag
accagcggaggcaaggggctgcatgtcgtggtaccggtgacgccgagggcaggctgggac
gaggtgaaggacttcgcccacgccgtggtcttgcatatcgccaagctcatcccgcagcgc
tttgtcgccaaacgcggcgctgagcggcgcgtcgggaagatctttatcgactacctgcgc
aacggtatcggggctaccaccgtcgcggccttctcggtgcgtgcgcgccctggtctgggc
ctgtcgatacctgtaggctgggatgaactggaatcgttggagagcgccgcggagtggagc
gtttccaactgtgggcgccggctggaagcgctggcatctcgtgatccatgggaagcctat
gcccggacgcgccaatccatttcgcgcgctgcggcccggctggcaagcgcgcctgggtga
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