Campylobacter ureolyticus: CUREO_0428
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Entry
CUREO_0428 CDS
T04021
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cure
Campylobacter ureolyticus
Pathway
cure03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cure00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CUREO_0428 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cure03400
]
CUREO_0428 (mfd)
Enzymes [BR:
cure01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CUREO_0428 (mfd)
DNA repair and recombination proteins [BR:
cure03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CUREO_0428 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
CarD_TRCF_RID
Helicase_C
TRCF
UvrB_inter
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AKT90307
UniProt:
A0A0K1HE61
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All DBs
Position
439970..442930
Genome browser
AA seq
986 aa
AA seq
DB search
MQSEVYEYFLNNHKDILICEDDKEAFKCSQATKFAGYESFILPDFRAVKGDDLRSFYGEL
IGISKELNSFYKSKAKKKVIITPIKTILNPLPAKSHLKSIFINFGEKIEQNEFKDEISRL
GYEVVDIVQMQGEISFRGEIIDIFPINSDEPFRILLDIDEVESIRKFDLITQISDKFELE
NLEISPFIANLNKDEFDKMSQKIKSLQNSALIDDMNSLGFWAIDGFINYLENFSFISIKD
FKESEFESLNIPKNLEVLPKAKIYKDLDITFSNELLEFHKEKHIKILASSQAIFESLDLK
NSDNVELIKSDLILNLISKDEIIISLNKKASKKRTRKASIVIDELKIGDFVVHENHGIGK
FAGLEKITVMGATKEFVSILYQNDDKLLLPVENLNLIDRYIADLGAAILDKLGKGSFAKI
KERVRVKLFEIASKIIALAAKRELIKGKVISLNNPLILQEYSEFASKAGFVYTKDQQNAI
DSIIKDFQSGKVMDRLISGDVGFGKTEVAMNASFLTIKNGFQVLFFVPTTLLSSQHYQTI
KERFSGFNIDVYRCDRFTSTASKNALKKALSDGKPLICIGTHALLNLKASNLGLIIIDEE
HKFGVKQKEKLKELSNNSHLLSMSATPIPRSLNMALSSIKSYSTLLTPPDDRLDVRTIVK
EFDEKIIKEAILRELRRGGQIFYVHNHIASINKVKNELLEILPNLKILVLHSKIEQKTTE
NEIEKFINKEYDLMLCTSIVESGIHMPNANTMIVNNANKFGIADLHQLRGRVGRSSIQGY
CYFLIEDKNTLSKDSLKRLVALESNSFLGSGSVLAYHDLEIRGGGNLVGEAQSGHIEAIG
YSLYLRMLEDEINALLNKKSNTLTNVDIKLSINAFLNSEFIKEDRLRLDLYKRLSKAQDE
SEIYDIKAEVEDRFGKIDEFSKQFFWLMIIKILAIKNGFKQISNYEMNITLTKLDDSKVV
IKSNSKDDDGILEAILIYLRKLDKIK
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagtgaagtttatgagtattttctaaacaaccacaaagatattttaatatgtgaa
gatgacaaagaggcattcaaatgctctcaagctactaaatttgcagggtatgaaagcttt
attttgcctgattttagggctgtaaaaggtgatgatttaagatctttttatggtgaactt
attggcataagcaaagagcttaatagcttttataaaagcaaagcaaagaaaaaagttata
ataacgcctattaaaacaattttaaatccccttcctgcaaagtctcacttaaaatcaatt
tttataaattttggtgaaaaaatcgaacaaaatgaatttaaagatgaaatttcaagactt
ggatatgaagttgtagatatcgttcaaatgcaaggagagattagttttagaggtgaaatt
atagatatttttcctataaatagcgatgagccttttaggattttacttgatattgatgag
gtcgaaagtattagaaagtttgatctaattactcaaataagtgataaatttgaacttgaa
aacttggaaatctcgccatttattgcaaatttaaataaagatgagtttgataagatgagt
caaaagatcaaatctttgcaaaacagtgctttgattgatgatatgaactcattgggattt
tgggcaattgatggctttataaattatttggaaaatttcagttttattagtataaaagac
tttaaagaaagtgagtttgagagtttaaatatacctaaaaatttagaagttttaccaaaa
gctaaaatttataaagacctagatattactttttcaaatgaacttttggaatttcataaa
gaaaaacatattaaaatactagcttcaagccaggcgatatttgagagtttagaccttaaa
aatagtgataatgtagagcttataaaaagtgatttaatcctaaatttgataagtaaagat
gagataataatttctttaaataaaaaagcctctaaaaaaagaacaagaaaagcaagtatt
gtaattgatgaacttaaaattggcgattttgttgttcatgaaaaccatggaataggaaaa
tttgcaggacttgaaaaaatcactgttatgggggctacaaaagagttcgtttctatctta
tatcaaaatgatgataagcttttgcttcctgttgagaatttaaatttaattgatcgctat
atcgcagacttgggtgctgctattttagataagcttggaaaaggaagttttgcaaaaatt
aaagaacgtgttagagttaaactttttgaaatagcttctaaaatcatagctttagctgca
aaaagagaacttataaaaggaaaagtcatctctttaaataaccctttaattttgcaagaa
tattcagaatttgcaagtaaagctggttttgtttatacaaaagatcaacaaaatgcaatt
gatagcatcataaaagattttcaaagtggcaaagttatggataggttgataagtggcgat
gttggttttggaaaaactgaagttgcaatgaatgcttcatttttaactattaaaaatggc
tttcaagttctattttttgtgccaactacgcttctttcatcacaacattatcaaactata
aaagagagatttagtggatttaatatagatgtttataggtgtgatagatttacaagtact
gctagtaaaaatgccttgaaaaaggctttaagtgatggaaagcctttgatttgtatagga
acacacgcacttttaaatttaaaagcttcaaatttaggacttataattatagatgaagaa
cataaatttggagtaaagcaaaaagaaaaattaaaagaactttctaataattctcatctt
ttaagtatgagtgcaactccaattccaagaagtttaaatatggcattaagctccattaaa
agctatagcaccttactaactccaccagatgatagattagatgttaggactattgttaaa
gaatttgatgagaaaattataaaagaggcgattttaagagagcttagaagaggtgggcaa
attttttatgttcataatcatatcgcttcaattaataaagtaaaaaatgagcttttagaa
atcttgccaaatttaaaaattttagttttacactcaaaaattgagcaaaaaacaacagaa
aatgaaatagaaaaatttataaataaagagtatgatttaatgctttgtacaagtatcgta
gaaagtggtatccatatgccaaatgcaaatacaatgatagtaaataatgcaaacaaattt
ggcatagcagatcttcatcagcttaggggacgtgttggaagaagcagtatacaagggtat
tgttattttttaatagaagataaaaatactttaagtaaagactctttaaagcgccttgtt
gcacttgaaagtaattcatttttaggaagtgggtcggttttagcttatcatgatttagag
attagaggtggtggaaatttagttggagaggctcaaagtgggcatattgaggctattgga
tatagtttatatttaagaatgcttgaagatgagataaatgcacttttaaataaaaaatca
aacacacttacaaatgttgatataaagcttagcataaatgcttttttaaactcagagttt
ataaaagaagatagattaagacttgatttatataaaagattaagcaaagctcaagatgag
agtgaaatttatgatataaaagctgaagttgaggatagatttggtaaaatagatgagttt
tctaaacagtttttttggcttatgataataaaaattttagctataaaaaacggttttaaa
caaatttcaaactatgagatgaatataactttaacaaaacttgatgattcaaaagttgtt
ataaaatcaaatagtaaagatgatgatggcatcttagaggcaattttaatatatttgcga
aaacttgataaaattaaataa
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