Corynebacterium ramonii FRC0011: CulFRC11_0758
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Entry
CulFRC11_0758 CDS
T03408
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cus
Corynebacterium ramonii FRC0011
Pathway
cus03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CulFRC11_0758 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cus03400
]
CulFRC11_0758 (mfd)
Enzymes [BR:
cus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CulFRC11_0758 (mfd)
DNA repair and recombination proteins [BR:
cus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CulFRC11_0758 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
AAA_22
UB2H
DUF3638
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AIU32345
LinkDB
All DBs
Position
806793..810587
Genome browser
AA seq
1264 aa
AA seq
DB search
MLSTDNAAANSHHPAMLAGLLKVAATDPKIKGLLEHVGDPALHITGIDQSRPWAIGALSH
RAPVLVITATGREAEDLTAELRAMLGDSVAWFPAWETLPHERLSPAADVAGQRARILSHL
SDLRVVVTAARGISQPILQNAEGRNALLLEAEKDYDLEELTRQLVFRAYQHVDLVAKRGE
FATRGGILDIFPTTMDRPVRLEFWGDEITEIREFSVADQRAIPDSSHEAVEIFPARELLV
TPGVAERAGDLALKYQGNPTLQELLSKLAEGTPADGMEALIPALVDTPLVTLPELMPQGT
HVIAVGPEKIRTRVADLQATDAEFLAAGWEAAAMGAAGPVAAQGLDLEASSYRSYESLEI
SARQAGCSWWTFAPSGMFEADDADTLPLDFEAGPTPRGDLSQIEEMMSLLLAHTTAGGRA
AFIAPAKGAIKRMVDRFKEKGIPTKVATPGWEPTPGEVTLYQALSHAGLVFPKVRKKAGT
EALPLVVVTETDLTGNRVGDIAGAKRRPAKRRNRVDPLALKTGDFVVHETHGIGRFLKMT
ERTITSGDETSRREYIVLEYAPAKRGQPADQLFVPMDSLDLLSKYVGGEKPSLSKMGGSD
WKNTKKKARAAVREIAGELVELYAKRQSAPGHPFAPDSPWQHEMEDNFPYVETEDQMMAI
EAVKADMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQVVVLVPTTLLAQQHLSTF
DERMAGFPVNLRGLSRFTSTIEAKETIKGLADGTVDIVIGTHRLLQTGIQWKNLGLVIVD
EEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPILTY
VGAQEDKQIAAAIRRELLRDGQVFFVHNKVSDIEKKARDLRDLVPEARIVVAHGQMSEEL
LEQTVQGFWDREFDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRER
GYAYFLYPKGQTLTENSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAG
VGFDLYVRLVGEAVEAYRALADGKIIDATDDGPKEIRIDLPVDAHIPESYINAERLRLEV
YRKLAASQSNADLILAVEEMEDRYGPLPEEVKRLLAVARLRHLARSAGISDIGVQGTRIK
IHPVELPDSKQVRLKRLLPSATYRAAAKAIQLSFPKEGRNVTDKPLRDVALLQWVADFLS
EMFEIPRISVTGEAVPEKIISVGESPSPGRARTAQRTVTRRSERNDDEDYEDKREARRRK
YRMR
NT seq
3795 nt
NT seq
+upstream
nt +downstream
nt
ttgttgtcaactgataacgcagccgctaacagccaccatcccgccatgcttgcggggcta
ctcaaagttgcggcgacagaccccaaaatcaagggactgctggaacacgttggtgaccca
gcgctgcatattaccggcatagatcaatctcgtccctgggctatcggagcgttatctcac
cgagccccagtactggttatcacggcgaccgggcgtgaagccgaggatctcactgcggaa
cttcgggcaatgctgggggactctgtagcctggttccccgcatgggagactcttcctcac
gagcgtcttagcccagccgccgatgtggcgggtcagagggctaggatcttgtcacatctg
agtgatctgcgcgtggttgtgacagccgcacgcggcattagccaaccgattcttcagaac
gcagaggggcgtaatgccctcctcctcgaggcagaaaaagattatgacttagaagagctc
actcgacagctcgtttttagggcttatcaacacgttgatcttgtggctaagcgcggggag
tttgctacccgaggcggaatcctcgatatattccccacgactatggatcgacctgttcgc
ttagaattctggggagacgagattacggagatccgggaattctcagtggctgaccagagg
gcaatcccggattcttcccacgaagctgtggaaattttccctgctcgcgaactcctcgtc
acacccggagtagcagagcgcgccggcgatttagcgttgaagtatcagggaaaccccacg
ctgcaagaactcttatccaagctggcggagggcacccctgcggacggtatggaagcgctt
atcccagcgctcgtagatacccctttggttacactccctgagctcatgccacagggcaca
catgtgatagcagtcggcccagaaaaaattcgcaccagggtggcggatttgcaggccacc
gacgcagagttccttgcagcggggtgggaggccgcagcaatgggggccgctgggccggtt
gctgcccaaggactagatctagaagctagctcctatcgctcgtatgagtctttagaaata
tccgcgcgccaggcggggtgctcatggtggacctttgcgccttctggcatgtttgaagca
gacgatgcggacactcttcccctcgactttgaagcaggacccaccccgcgcggtgatctc
tctcagattgaagagatgatgtccctgctgctagcccataccaccgcaggcggtagggct
gcctttatcgccccagctaagggtgcgatcaagcgcatggtggataggttcaaagaaaaa
ggcatccccacaaaggtagccacaccgggctgggagcccacgccgggagaagtgactctc
taccaggcgcttagccacgcgggcctcgtctttcccaaagtccgtaaaaaagctggaacc
gaggcattgcctcttgtcgtcgtcacagagaccgatctcactggtaaccgcgtgggcgat
atcgcaggagcaaagcgtcgtccagctaaacgacgcaaccgcgtagatccgcttgcgctg
aagaccggcgactttgtggtgcatgaaacccacggcattggtcgattcctcaaaatgacc
gagcgcacgattacgtcaggggacgagacctcgcgacgggaatacatcgttctggaatac
gcaccggcaaaacgcgggcaacctgcagaccagctttttgttcccatggactcccttgat
ctcctgagcaaatacgtgggaggcgagaaaccctcgttatccaagatggggggctccgat
tggaagaacactaagaaaaaggctcgcgctgcagttcgggaaatcgccggtgaactcgtt
gagctttatgccaagcgacaatccgcgccgggacacccctttgcacctgattccccctgg
caacatgagatggaagacaactttccatacgttgaaactgaagaccagatgatggccatc
gaggcggtcaaagcggatatggaaaaacccgtccccatggatcgcgtcattgtaggagat
gtggggtatggcaagacagaagttgctgtgagggccgcttttaaggctgttcaggatggc
aaacaagtggtggtcctcgttcctaccacgttgctagcgcagcagcatctgtccacgttt
gatgaacgtatggccggattcccggtgaatctgcgtggcttaagccgttttacctccacg
attgaagcaaaagaaaccataaaagggcttgccgacggcaccgtggatatcgtgatcggt
acgcatcgcctgcttcaaacaggaattcagtggaagaacctcggattggtcatcgtcgat
gaggaacaacgttttggtgtggagcataaagaacacatcaaagcactgcgtacccatgtc
gatgtgctgacaatgtctgccacaccgatcccacgaactttggaaatgtctatggctggg
atccgcgagatgtcgaccattttgactcctcccgaggatcgccaccccatcttgacgtat
gttggcgcacaagaagataagcaaattgctgcagctatccggcgcgaattgttgcgagac
ggccaggtgttctttgtgcataacaaggtctccgatattgaaaagaaagctagagacctg
cgagacttagtgccggaagctcgtattgttgttgcgcatggtcagatgagtgaggaactg
ctggaacaaactgtccaggggttctgggatcgtgaatttgatgtgctggtgtgcaccacc
atcgtggagactggtttggatattgccaatgccaataccctcatcgtggagaacgcacat
catatgggactttcgcagcttcatcagctgcgcggacgcgtagggcgttcccgggaacgt
ggttacgcgtacttcctgtatcccaagggacaaacactgacggaaaactcctacgaccgc
ctggccaccatcgctcagaacaacgatttgggtgctggtatggcagtggccatgaaagac
ctggaaatgcgaggcgccggtaacgtacttggtgcgcagcaatctggccatatcgcaggc
gtaggatttgatctttatgtgagacttgtcggtgaagccgtggaggcctaccgagccctt
gcagacggaaaaatcatcgatgccaccgatgacgggccaaaagaaatccgcatcgatttg
ccggtggatgcgcacatcccagagtcgtatatcaacgcagaacgactccggcttgaggtg
tataggaagctggcggcgtcgcaaagcaatgccgatctgatactcgcagtagaagagatg
gaggatcgctacggaccattgcctgaagaggtcaaacgcctcctggctgtggctcggcta
cggcacctcgccagatccgcgggcatcagcgacattggtgtgcagggaacgcggatcaag
atccatccggtggaactcccagattccaaacaagtccggcttaaacggctactgccttcc
gcgacataccgagctgcggctaaggctatccagctgtcctttcctaaggaggggcgcaac
gttaccgataagccgcttcgcgacgtcgccctcctccaatgggtagcagacttcctatcg
gaaatgtttgaaataccacgcatctcagttacgggggaagccgtgcctgaaaaaatcatc
tccgtgggggaatcacccagccctgggcgggcgcgcactgctcaacgtaccgttactaga
cggagcgagcgtaatgacgacgaggactatgaggacaaacgtgaagcgcgtaggaggaag
tatcggatgcgttga
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