Cupriavidus sp. USMAA2-4: BKK79_00560
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Entry
BKK79_00560 CDS
T05072
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cuu
Cupriavidus sp. USMAA2-4
Pathway
cuu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cuu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BKK79_00560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cuu03400
]
BKK79_00560
Enzymes [BR:
cuu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BKK79_00560
DNA repair and recombination proteins [BR:
cuu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BKK79_00560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Glyco_tran_WecG
SNF2-rel_dom
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AOY90487
UniProt:
A0A1D9GS77
LinkDB
All DBs
Position
1:complement(108187..111639)
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AA seq
1150 aa
AA seq
DB search
MPDAPSLPLPVSLPLLKSGQRHTVAGLHGSADALALAAYARQMKGQAPMLAVVCASAVDA
QRLAEEIPWFAPELRVRLLPDWETLPYDSFSPHQDLVSERLATLHDIQGSQCDVMLVPAS
TALYRLAPPSFLAAYTFFFKQGERLDENALKSQFTLAGYEHVSAVMRPGEYSVRGGLIDL
FPMGSALPYRIDLFGDEIETIRAFDPDTQRSLYPVKEVRLLPGREFPLDEAARTAFRGRW
REVFEGDPSKSPIYKDIGNGVPSAGIEYYLPLFFEQTATVFDYLPADTQLAFVGEIDEAV
RRFWADTTQRYNFMRHDRERPLLPPADLFLSDEAFFIAAKPYARLVLQAGDGRGEALSAA
LPDVSVNRRAEDPLVNLEALLLDKQRRVLMCADSAGRRETLLQFFAESGLRPLPVDDFAA
FLAGDSHFSIVVAPLQSGFGLPGAAGAPALVTEAELYAGTARRAGRRKQEQASTVDSMVR
DLAELKIGDPVVHSEHGIGRYQGLVSMDLGNGDEEFLHLDYEKGARLYVPVHQLHVISRY
SGADPDTAPLHQLGSGQWDRAKRKAAQQIRDTAAELLNLYARRAAREGFAFPLSPKDYET
FAESFGFEETPDQAAAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVLGGKQV
AMLAPTTLLAEQHFQNLSDRFADWPVRIVELSRFKTKKEIDAAVKQINEGAADIVIGTHK
MLSDDVKFQRLGLVIIDEEHRFGVRQKEALKTLRAEVDVLTLTATPIPRTLGMALEGLRD
FSVIATAPQKRLAIKTFVRREEDSVIREAILRELKRGGQVYFLHNEVETIENKRAKLAEL
VPEARIAVAHGQMHERELERVMRDFVARRDNILLCTTIIETGIDVPTANTILIHRADKFG
LAQLHQLRGRVGRSHHQAYAYLLVHDPEGLSKQATRRLEAIQQMEELGSGFYLAMHDLEI
RGAGEVLGDKQSGEIHEIGFQLYTDMLNTAVKALKAGKEPDLLAPLSATTEINLGTPALL
PNDYCADVHERLSLYKRLANCETAEAVDDIQEELVDRFGRLPPQALALIETHRLRIAAVP
LGVRKIDAGEASLALQFVPNPPIDAMRIIDLVQKNRHIKLAGQDKLRVEAKMPDVAARAQ
QIKQTLRQLS
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgcctgacgctccgtcccttccgcttcccgtctccctgccgctgctcaaatccggccag
cgccataccgtggccggcctgcacggctccgccgacgcgctggcgctggcggcctatgcc
cgccagatgaaaggacaggcgccgatgctggccgtggtctgcgccagcgccgtcgacgcg
caacgcctggccgaggagattccctggttcgcgcccgagctgcgcgtgcgcctgctgccc
gactgggaaacgctgccttatgacagcttctcgccgcaccaggacctggtctccgagcgg
ctggccacgctgcacgacatccagggcagccagtgcgacgtgatgctggtgcccgcctcg
accgcgctgtaccggctcgcgccgccgtccttcctggccgcctacaccttcttcttcaag
caaggcgagcggctggacgaaaacgcgctcaagtcgcagttcacgctggccggctacgag
catgtcagcgcggtgatgcgccccggcgaatacagcgtgcgcggtggcctgatcgacctg
ttcccgatgggctcggcgctgccctaccgcatcgacctgttcggcgacgagatcgagacc
atccgcgccttcgaccccgacacccagcgcagcctgtatccggtcaaggaggtgcggctg
ctgccgggacgcgagttcccgctcgacgaagccgcccgcaccgccttccgcggccgctgg
cgcgaagtgttcgagggtgacccgagcaaatcgccgatctacaaggacatcggcaacggc
gtgccctcggccggcatcgagtactacctgccgctgttcttcgaacagaccgccaccgtc
ttcgactacctgcccgccgacacccagctcgccttcgtcggcgagatcgacgaggcggtg
cgacgcttctgggccgacaccacgcagcgctacaacttcatgcggcacgaccgcgagcgc
ccgctgctgccgcccgccgacctgttcctctccgacgaagccttcttcatcgccgccaag
ccctacgcgcgcctggtgctgcaggccggcgacgggcgcggcgaagccctcagcgccgcg
ctgcccgacgtctccgtcaaccgccgcgccgaagacccgctggtcaacctggaagcgctg
ctgctcgacaagcagcgccgcgtgctgatgtgcgccgactcggccgggcgccgcgagacg
ctgctgcagttcttcgccgagagcggcctgcgcccgctgccggtggacgacttcgccgcc
ttcctggccggcgacagccacttttccatcgtggtggcgccgctgcagagcggcttcggc
ctgcccggcgccgccggcgccccggccctggtcaccgaagccgagctgtacgccggcact
gcgcgccgcgccggccgccgcaagcaggaacaggccagcaccgtcgattcgatggtgcgc
gacctcgccgagctcaagatcggcgacccggtggtgcacagcgagcacggcatcggccgc
taccagggcctggtctcgatggacctgggcaacggcgatgaagagttcctgcacctcgac
tacgagaagggcgcacgcctgtacgtgccggtgcaccagctccacgtgatctcgcgctat
tccggcgccgatcccgacaccgcgccgctgcaccagctcggctccggccagtgggaccgc
gccaagcgtaaagccgcccagcagatccgcgacaccgccgccgagctgctcaacctctac
gcccgccgtgccgcgcgcgaaggcttcgccttcccgctctcgcccaaggactacgagacc
ttcgccgagagcttcggtttcgaggaaacgccggaccaggccgcggccatcgccgccgtc
atcgccgacatgacctcgggcaagccgatggaccgcctggtgtgcggcgacgtcggcttc
ggcaagaccgaggtggcgctgcgcgcggccttcgtcgccgtgctgggcggcaagcaggtg
gccatgctggcacccaccacgctgctggccgagcagcacttccagaacctgtcggaccgc
ttcgccgactggccggtgcgcatcgtcgagctgtcgcgcttcaagaccaagaaagagatc
gacgccgccgtcaagcagatcaacgaaggcgccgccgacatcgtcatcggcacccacaag
atgctgtccgacgacgtcaagttccagcgcctgggcctggtcatcatcgacgaggaacac
cgtttcggcgtgcgccagaaggaagcgctcaagacattgcgcgccgaggtggacgtgctg
acgctgaccgccaccccgatcccgcgcacgctgggcatggcgctggaaggcctgcgcgac
ttctccgtgatcgccaccgcgccgcagaagcgcctggccatcaagaccttcgtgcggcgc
gaggaagacagcgtgatccgcgaggccatcctgcgcgagctcaagcgcggcggccaggtc
tacttcctgcacaacgaagtcgagaccatcgagaacaagcgcgccaagctggccgaactg
gtacccgaggcgcgcatcgcggtggcgcacggccagatgcacgaacgcgagctggagcgc
gtgatgcgggacttcgtcgcccgccgcgacaacatcctgctgtgcaccaccatcatcgag
accggcatcgacgtgccgaccgccaacaccatcctgatccaccgcgccgacaagttcggc
ctggcgcagctgcaccagctgcgcgggcgcgtcgggcgctcgcaccaccaggcctatgcc
tacctgctggtgcacgatccggaaggcctcagcaagcaggccacgcgccggctggaggcc
atccagcagatggaggaactgggctccggcttctacctcgccatgcacgacctggaaatc
cgcggcgccggcgaggtgctgggcgacaagcagtcgggcgagatccacgagatcggcttc
cagctctacaccgacatgctcaacaccgccgtcaaggcgctcaaggccggcaaggaaccc
gacctgctggcgccgctgtcggccaccaccgagatcaacctcggcaccccggcgctgctg
cccaacgactactgcgccgacgtgcacgagcggctctcgctgtacaagcggttggccaac
tgcgaaaccgccgaggccgtcgacgacatccaggaagagctggtcgaccgcttcggccgc
ctgccgccgcaggcgctggcgctgatcgagacccaccgcctgcgcatcgccgcggtgccg
ctgggcgtgcgcaagatcgacgccggcgaagcctcgctggcgctgcagttcgtgcccaac
ccgccgatcgacgccatgcgcatcatcgacctcgtgcagaagaaccgccacatcaagctg
gccggacaggacaagctgcgcgtggaagccaagatgccggacgtggccgcgcgcgcgcag
cagatcaagcagacgctgcggcagctgagctga
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