KEGG   Cupriavidus sp. USMAA2-4: BKK79_32195
Entry
BKK79_32195       CDS       T05072                                 
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
cuu  Cupriavidus sp. USMAA2-4
Brite
KEGG Orthology (KO) [BR:cuu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BKK79_32195 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cuu03400]
    BKK79_32195 (ligD)
Enzymes [BR:cuu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BKK79_32195 (ligD)
DNA repair and recombination proteins [BR:cuu03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BKK79_32195 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: AOY96270
UniProt: A0A1D9H963
LinkDB
Position
2:2785810..2788449
AA seq 879 aa
MARTIRQAPATAPGVAAKAQQATGKRLQDALAPYRRRRDFRTTPEPRDEAAARPRRVAGR
HGRALAFVVQKHAARRLHYDFRLELDGTLKSWAVPKGPSLDPADKRMAVHVEDHPVDYAE
FEGVIPPGQYGAGTVIVWDRGAWIPEGDPRAAYRAGKLTFELRGEKLRGHWTLVRMHGNR
QKDQDAWLLIKGRDEASVPITELDVVEAMPDSVLSGAAGRAPRKGASARKSGKPKAAEDV
PLPRGARAARLPLTLSPQLATLVETPPADEQDWRYEIKFDGYRLLARIDGKGVRLFTREG
NDWTSRLQAVARDVGALGLPDGWLDGEIVVLGKHGETDFQALQNAFRTSSVDAIQYFVFD
LPFYAGHDLRKVRLAQRRGLLRRLFERNTSPRLQFSEEFEAGPADMLDAACRMKLEGVIG
KRADSHYVSARSKTWIKLKCTLRQEFVIGGFTDPRGSRHGIGSLLLGVHASNGHLRYAGN
VGTGFDERMLSTLRAKLDGLVTDTTPFDAPPASLNVHWVRPKLVAEVSFGSWTRDGRVRH
SVFHGLRSDKPASAVILEQPAEVPAGPARPSHKHKHGHKPTAAGGRVAISHADRIVDQAT
GITKGELVRYYERVAPLMLPHLRDRPVALVRAPDGVGGEQFFQRHGDTLRVDGIHVLDAG
LWPGHPGLLEIVSAPALVAAAQLNAIEFHTWNASKRSIAKPNRIVFDLDPGKGLSWAHMR
EGAAMVKALLDELGLVSFLKTSGGKGLHVVVPVTPRAGWDEVKDFAHAVVLHIAQLIPQR
FVAKRGAERRVGKIFIDYLRNGIGATTVAAFSVRARPGLGLSIPVGWDELESLESAAEWS
VSNCGRRLEALASRDPWEAYARTRQSISRAAARLASAPG
NT seq 2640 nt   +upstreamnt  +downstreamnt
atggcgaggaccatccggcaggctccggcaacagcaccaggcgttgccgcgaaagcgcag
caagcgactggcaagcggctgcaggatgcgctcgcgccgtaccggcgccgacgggacttc
cggaccacgccggagccgcgcgacgaggctgcggcacgcccgcgccgcgtcgccggcagg
catggcagagcgcttgccttcgtggtccagaaacatgccgcgcgccgcctgcattacgac
ttccgcctcgaactggatggcacgctcaagagctgggccgttcccaaggggcccagcctc
gatccggccgacaagcgcatggcggtgcacgtggaagaccatccggtggactatgccgag
ttcgaaggcgtgattccgcccggccaatatggcgcgggcaccgtcatcgtatgggatcgt
ggcgcgtggatcccggagggcgacccgcgtgcggcctatcgtgccgggaagctgacgttc
gagttgcgcggggagaagctgcgcggccattggacgctggtccgcatgcacggcaacagg
cagaaggaccaggatgcatggctgctgatcaagggccgcgacgaagcctccgtgccgatc
acggaactcgatgtggtggaagccatgccagacagtgtcctctccggagcggcagggcga
gcgccgcgcaagggcgcatcagcgcggaagtcaggcaagccgaaggcagcagaggacgtg
cccctgcctcgcggcgccagggcggctcggttgccgctgacgctgtcgccacaactggca
acgctggtcgagacgccacccgccgatgagcaggactggcgctatgagatcaagttcgat
gggtatcggctgctggcgcggatcgacggcaagggcgtccgcctgttcacgcgcgagggc
aacgattggacttccaggctgcaagcggtggcgcgcgacgtcggggcgctcggcttgccc
gatggctggttggatggcgagatcgtggtgttgggcaagcatggagagaccgatttccag
gcgttgcagaacgccttcaggacttcgtccgtcgatgccatccagtacttcgtcttcgac
ctgcccttctacgccggccacgacttgcgcaaggtgcgcctggcgcagcgccgcgggctt
ctcaggcggctcttcgagcgcaatacttcgccgcgcctgcaattcagcgaggaattcgag
gctggcccggctgacatgctggacgcggcgtgccgcatgaagctggaaggcgtcatcggc
aaacgcgccgattcgcactacgtcagcgcgcgcagcaagacatggatcaagctgaaatgc
acgctgcggcaggagttcgtgattggaggcttcaccgaccccaggggcagccggcacggt
attggctccttgctgctgggcgtgcatgccagcaacgggcacctgcgctatgccggcaat
gtcggcacgggtttcgacgagcgcatgctcagtactttgcgcgccaagctggatgggctg
gtcactgacacgacaccattcgacgcgccgccggcatcgctgaacgtgcattgggtgcgc
ccgaaactggtggccgaagtttcgttcggttcgtggacgcgtgatgggcgggtgcggcat
tcggtttttcatggcctgcgcagtgacaagcccgcatctgccgtcattctcgaacagcct
gccgaggtccccgccgggccagcacggccttcacacaagcataagcacgggcacaagccg
actgccgcgggcgggagggtcgccatcagccacgcggatcgcatcgtcgaccaagccacg
ggaatcaccaaaggagaactcgtgcgctactacgagcgcgtggcgccgctgatgctgccg
cacctgcgtgaccgtccggtcgccctggtgcgcgctcccgacggcgtgggcggcgagcag
ttcttccagcgccatggcgacacgctgcgggtcgacggtatccatgttctggatgccggc
ctgtggccgggacatccgggattgctggagatcgtctcggcaccggcgctggtggcggct
gcacagctcaacgcgatcgagttccacacctggaatgccagcaaacgcagtatcgccaag
cccaaccgtatcgtcttcgacctggatcccggcaagggcttgtcctgggcgcatatgcgc
gagggcgcggcgatggtgaaggcgctgctcgatgaacttggactcgtcagcttcctcaag
accagcggaggcaaggggctgcatgtcgtggtaccggtgacgccgagggcaggctgggac
gaggtgaaggacttcgcccacgccgtggtcttgcatatcgcccagctcatcccgcagcgc
tttgtcgccaaacgcggcgctgagcggcgcgtcgggaagatctttatcgactacctgcgc
aacggtatcggggctaccaccgtcgcggccttctcggtgcgtgcgcgccctggtctgggc
ctgtcgatacctgtaggctgggacgaactggaatcgttggagagcgccgcggagtggagc
gtttccaactgtgggcgccggctggaagcgctggcatctcgtgatccatgggaagcctat
gcccggacgcgccaatccatttcgcgcgctgcggcccggctggcaagcgcgcctgggtga

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